| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1560 |
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| Symbol | |
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| ID | 4018034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1813006 |
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| End bp | 1814211 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955570 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_562568 |
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| Protein GI | 91792917 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000180142 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTCTG AGTCTATGCA GAACGTGGTT ATCTTGGGTG CGACTGGGTC TATAGGCGCT
AGCACCTTAA GTGTGATGTC AGCCCAAACT CAGCGCTATC GAGTCTATGG GCTTGTGGCC
AATACCAATG TGGATAAAAT GCTGGCCCTG TGCCTTGCCC ATAAACCTGT GATTGCTCAC
ATGGTTAATG AGCAGGCGGC CATGACGCTC AAAGCTGCTT TACCGCCGCA CATAGGCGTC
ACAGTCACCA CAGGTGAAAA TGCATTGATT GATCTGGTGA CATCGAACCA AATTCATACC
GTGATGGCGG CGATTGTTGG TGCAGCGGGC TTATTATCTA CTTTTGCGGC GGTAAAAGCT
GGCAAGCGAG TCTTATTGGC CAATAAAGAA GCCTTGGTGA TGTCTGGCGC CTTATTTATG
GATGCTTGCA GACAATCTGG CGCCACGCTA TTACCGGTTG ATAGTGAACA TAATGCCATT
TTTCAATGCC TTCCTGAATC GGTTCAAACT AATCTAGGGC ATTGCTCCTT AGATGCTGCT
GGGGTATCCA GTATCTTGCT CACAGGCTCA GGTGGTCCTT TTTTAACGGC CCCGCTTGAG
AGTTTAGCTT CAGTGACCCC AGCGCAAGCT TGCAAACACC CTAATTGGTC TATGGGGCCT
AAAATTTCCG TAGATTCAGC CACCATGATG AATAAAGGGC TCGAGTTTAT TGAAGCCCGT
TGGTTATTTA ACACCAATGC TGCGCAACTT AAAGTGGTAG TGCATCCCCA AAGTGTTATC
CATTCTATGG TGCAATATAG GGACGGTTCA GTGTTGGCGC AGATGGGGAA TCCGGATATG
CGAACCCCCA TCGCTCATTG TCTGTCTTAT CCACAGAGGA TAACCTCGGG TGTTGAAGCG
TTAGACTTTT TCAAATTGGG TGATTTAAGC TTTTGTGAAG CTGATATTGC CCGCTTTCCT
TGCCTGCATC TAGCCATGCA AGCCTGTGAA CATGGACAAG AAGCCACCAC AGTTTTAAAT
GCCGCCAACG AAGTGGCAGT TGACGCGTTC CTTGCGGGTC AAATTGGTTT TACTCAAATT
GCTGCCATCA ATGAAAGCTG TTTGGCACAG GTGTCACAAA GCAGCTTAAA ATCCATTGAT
GATATTTTAC AGTTAGATAG CTTAACCCGT CAGCACGCTT GGCAAGCCAT TAAACGTATC
AATTAA
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| Protein sequence | MPSESMQNVV ILGATGSIGA STLSVMSAQT QRYRVYGLVA NTNVDKMLAL CLAHKPVIAH
MVNEQAAMTL KAALPPHIGV TVTTGENALI DLVTSNQIHT VMAAIVGAAG LLSTFAAVKA
GKRVLLANKE ALVMSGALFM DACRQSGATL LPVDSEHNAI FQCLPESVQT NLGHCSLDAA
GVSSILLTGS GGPFLTAPLE SLASVTPAQA CKHPNWSMGP KISVDSATMM NKGLEFIEAR
WLFNTNAAQL KVVVHPQSVI HSMVQYRDGS VLAQMGNPDM RTPIAHCLSY PQRITSGVEA
LDFFKLGDLS FCEADIARFP CLHLAMQACE HGQEATTVLN AANEVAVDAF LAGQIGFTQI
AAINESCLAQ VSQSSLKSID DILQLDSLTR QHAWQAIKRI N
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