| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1417 |
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| Symbol | |
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| ID | 4017442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1652634 |
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| End bp | 1654040 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955425 |
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| Product | DEAD/DEAH box helicase-like protein |
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| Protein accession | YP_562426 |
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| Protein GI | 91792775 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0306268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGGCT ATTATTTTTT AGGGGAACAA CCTTTGCAAT TTTCCGACTT TTCATTAGAT
AAGCGCCTGT TAGACAGCTT GAAACATCTA GGCATTACCA CGCCAACACC CATCCAAGAA
CAAGCGCTGC CCATTGCATT AACGGGCAAA GATCTAATGG CGTCTTCAAA AACGGGCTCA
GGCAAGACGT TAGCTTTCTT GCTACCCGCT ATGCAAAGGA TTATCTCCAC TAAAGCCTTA
TCTAAGCGTG ACCCTAGGGT ATTGATCTTG CTGCCCACTC GCGAGCTTGC TCAGCAAGTT
TACGGCCAAC TCAGGTTGCT TGTGGCTAAC ACTCAATACA AGGCAGTGAG CATACTGGGT
GGTGAGAATT TTAACGACCA AGCCAAAGCC TTAAGCCGTG AGCCCCACTT TATTGTGGCA
ACCCCTGGGC GCATTGCCGA TCACTTGCAG CAGCGTCACT TGCACTTAAA TGGCCTTGAA
TTACTGATTT TAGATGAAGC TGACCGCATG TTGGACTTGG GCTTTGCCCC TCAACTTGCC
GCCATTAATG CCGCCGCCGA TCATAAGCGT CGTCAGACAT TGATGTTCTC AGCCACTTTA
GAGCATGATG AAATTAACGA AATTGCGGCC ACCTTACTTA AGAGCCCCAA CCACATTGCC
ATTGGTGCGG CTTACACTGA GCACGCCGAT ATTACACAGC GCATTATCTT GGTCGATCAC
TTAGATCATA AACAAGCCTT GCTTGAGCAT GTGTTAACTA ATGAAACCAA CAAACAGATC
ATCATCTTTA CCGCCACCCG TGTCGATACT GAGCGCTTAG CAAGTTTGTT GGCGGATAAA
GGCTTTGCCA CTGCGGCATT AAGTGGCAAT CTCAATCAAG GCGCGCGCAA TCAGATCATG
GATCAATTTG CTCGCGGTCA AAAACAAATT CTGGTCACTA CTGATGTCGC CTCTCGCGGC
CTTGATCTTA TCAATGTGTC ATTAGTGATT AACTTTGATA TGCCAAAATT TGCCGAAGAA
TACGTTCACC GTATTGGCCG TACTGGTCGT GCTGGCGCTA AAGGAGATGC GGTCTCCTTA
GTGGGCCCAA AAGATTGGGA TAGCTTTATC AAGGTGCAAG CCTTCTTACG CAAGACCTTT
GAGTTCACTG TCATCGACGG CCTAAAAGCC AAGTTCAGCG GCCTAAAAGC GAAAGCCAAA
ACAGATAAGG TCAATTCCAC TAAACGTGTG GCAAAGGCGG CATCTAAAGC AAAATCACCC
CATGCCAAGC CGGCGCCAAA GCGTGATAAG CGCTTTAGCA CAGGTGTCGA TGTGGGAGAT
GCGCCGATGC GCCGTAAAGT TAAGCCAAGC CTGATTATCG AAACGGATGC TAGCATTCAG
TCCGATATCG ATAATGATGA CGAATAA
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| Protein sequence | MLGYYFLGEQ PLQFSDFSLD KRLLDSLKHL GITTPTPIQE QALPIALTGK DLMASSKTGS
GKTLAFLLPA MQRIISTKAL SKRDPRVLIL LPTRELAQQV YGQLRLLVAN TQYKAVSILG
GENFNDQAKA LSREPHFIVA TPGRIADHLQ QRHLHLNGLE LLILDEADRM LDLGFAPQLA
AINAAADHKR RQTLMFSATL EHDEINEIAA TLLKSPNHIA IGAAYTEHAD ITQRIILVDH
LDHKQALLEH VLTNETNKQI IIFTATRVDT ERLASLLADK GFATAALSGN LNQGARNQIM
DQFARGQKQI LVTTDVASRG LDLINVSLVI NFDMPKFAEE YVHRIGRTGR AGAKGDAVSL
VGPKDWDSFI KVQAFLRKTF EFTVIDGLKA KFSGLKAKAK TDKVNSTKRV AKAASKAKSP
HAKPAPKRDK RFSTGVDVGD APMRRKVKPS LIIETDASIQ SDIDNDDE
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