| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1338 |
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| Symbol | fliR |
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| ID | 4017624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1557298 |
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| End bp | 1558101 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955335 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_562347 |
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| Protein GI | 91792696 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAATAT TGTTTGATGA AATCAGTCAA ACGATAGCAG CCTACCTATG GCCACTATTT
CGTATTTCCT CCATGTTAAT GATCATGGCG GTATTTGGTG CCAATACCAC TCCCTCACGA
GTTAGGCTGA TGTTAGCCGT CGCGTTTACG TTCGCTATCG CGCCTGTACT GCCTGAAATC
AAAAATGTGG AGTTGTTCGC TTTTAGCGCC GTGTTTATTA CTTTGCAGCA AATACTCATT
GGTGCAGTGA TGGGCTTTGT GACGTTAATG TTGATGCAAA CCTTTGTGTT GACAGGTCAA
ATTATCGGTA TGCAAACAAG CTTAGGTTTC GCTTCTATGG TGGATCCTGG TTCTGGTGAG
CAAACCCCTG TGGTAGGTAA CTTTTTTCTC TTATTAGCAA CACTGATTTT CTTATCAATA
GACGGGCATT TATTGATGTT TCGCATGATA GTGGCAAGTT TTGAATCTAT TCCTGTATCA
AACCAAGGGA TAGAAATAGC GAACTATAAG ATACTGGCTG AATGGGGCGG TTATATGTTT
GGCGCGGCAT TAACCATGTC TATGTCTGCC ATAGTTGCCT TGCTATTGAT TAATTTGTCT
TTTGGTGTGA TGACTCGCGC AGCGCCGCAA CTCAATATTT TTTCCATTGG TTTCCCTGTC
ACCATGGTCA GCGGTTTGCT TATTTTATGG TTGACTCTTG GACCCATTAT GGCTCACTTC
GATGAGGTGT GGTATGCGGC CCAAGTCTTA ATGTGTGATT TGCTTAGTCT AACTTGCCAA
CTGGATGAAG CCACTGTTTT CTAG
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| Protein sequence | MEILFDEISQ TIAAYLWPLF RISSMLMIMA VFGANTTPSR VRLMLAVAFT FAIAPVLPEI
KNVELFAFSA VFITLQQILI GAVMGFVTLM LMQTFVLTGQ IIGMQTSLGF ASMVDPGSGE
QTPVVGNFFL LLATLIFLSI DGHLLMFRMI VASFESIPVS NQGIEIANYK ILAEWGGYMF
GAALTMSMSA IVALLLINLS FGVMTRAAPQ LNIFSIGFPV TMVSGLLILW LTLGPIMAHF
DEVWYAAQVL MCDLLSLTCQ LDEATVF
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