Gene Sden_1239 details

Gene Information

• Locus tag: Sden_1239
• Symbol: smpB
• ID: 4017289
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 1448208
• End bp: 1448768
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637955235
• Product: SsrA-binding protein
• Protein accession: YP_562248
• Protein GI: 91792597
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAACGC TGCCTTTCGA TAGAAAGTGG TTACAACGAA TACACATAAA GACGGTAAAA 
AGAATGGTAA AAAAGAATTC GAAATCAGCA AAAAATGCCT CTGCGACCAT AGCGCGTAAT 
AAACGCGCCA CGTTTGAGTA CCGCATCGAA GATAAAATTG AAGCGGGCTT GCAGTTAATG 
GGCTGGGAAG TCAAATCCAT CCGTATGGGC AAGGTCAACC TGTCTGACTG TTACGTGTAT 
ATCAAGGAAG GTGAAGCCTT CATGCACGGC TGTACGATTC AGCCACTGAA CACGGCATCG 
ACCCATGTTG TCTGCGATCC TATTCGCACC AAAAAGCTGC TACTAAAGCG CAGTGAAATC 
GACAAGCTCG CAGGCCTTAT CGAACGCCAA GGCTACACCT TAATTCCTTT GTCTATGTAT 
TGGCGCAAAG GGGCTTGGGT CAAAGTGGAA ATCGGCCTAG GTAAAGGTAA AAAAGATCAC 
GACAAACGTG AAGACACCAA AGAGCGCGAG TGGAAAATTG AAAAAGCCCG TGTGATGAAA 
AAAGACAAAG TCGGCGCCTA G 

 

Protein sequence

MTTLPFDRKW LQRIHIKTVK RMVKKNSKSA KNASATIARN KRATFEYRIE DKIEAGLQLM 
GWEVKSIRMG KVNLSDCYVY IKEGEAFMHG CTIQPLNTAS THVVCDPIRT KKLLLKRSEI 
DKLAGLIERQ GYTLIPLSMY WRKGAWVKVE IGLGKGKKDH DKREDTKERE WKIEKARVMK 
KDKVGA