Gene Sden_1199 details

Gene Information

• Locus tag: Sden_1199
• Symbol: ispF
• ID: 4017722
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 1395672
• End bp: 1396154
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637955189
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_562208
• Protein GI: 91792557
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.000868166
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTCC GAATTGGTCA TGGTTTTGAT GTGCATAAAT TTGGCGGCGA TAAGCCGCTT 
ATTTTAGGGG GCGTCACTGT GCCCTATGAC ACAGGCTTGA TTGCCCATTC AGACGGTGAT 
GTGGTGCTGC ATGCTATCAG CGATGCCATC TTGGGCGCCA TGGCGCTGGG GGATATTGGT 
AAGCACTTCC CCGATACTGA TGATGCCTTT TCTGGCGCCG ATAGCCGGGT ATTACTGCGC 
CACTGTTATC AATTGGCGCT AAATAAGCAT TTTCAATTGG GTAATTTGGA TGTGACTGTG 
ATTGCACAGG CACCGAAAAT GGCGCCCCAC ATTGAAGCCA TACGTCAACT GCTGGCGCTC 
GATCTGAACA CTGACATAGA CAATATCAAT GTAAAAGCGA CCACCACAGA AAAGTTAGGT 
TTTACCGGCC GCAAAGAAGG CATCGCCGTC GAAGCCGTTG TCCTGATGCA GCAAGCGATT 
TAA 

 

Protein sequence

MKLRIGHGFD VHKFGGDKPL ILGGVTVPYD TGLIAHSDGD VVLHAISDAI LGAMALGDIG 
KHFPDTDDAF SGADSRVLLR HCYQLALNKH FQLGNLDVTV IAQAPKMAPH IEAIRQLLAL 
DLNTDIDNIN VKATTTEKLG FTGRKEGIAV EAVVLMQQAI