| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1192 |
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| Symbol | rumA |
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| ID | 4017677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1386242 |
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| End bp | 1387648 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637955182 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_562201 |
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| Protein GI | 91792550 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000506489 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAT TTTTTAAAGA AAAAGCGAAT AAATCTAAAC AGCTATCCCC TAAGCTTAGT
CTAAACGTCA CTCAACTTGA TCATCTTGGC GCAGGCATGG CCCAACATCA GGGTAAAGTG
GTATTTATTC CTCAGGCTTT GCCAGGTGAG CGGGTATCGG TGCAATTGAC CGACCAAAAA
AAGAGTTTTG CTAAGGCGAA ACTGATTAAA ATAGAGCAGC AAAGCCCTGA GCGGGCCGAT
GCCAGCTGCC CCCATTACGG TCACTGCGGC GGGTGTGATT TGCAGCACTT AGCCCTGGAT
GCCCAGCAAA ATCATAAGCA GCAGAGCTTA AATGAATTGA TGGTGAAGTT TTCTGGAAGC
CCTGTTATTG ACCCACAAGT GCAAGCAGCA CCTTTAGTGT CCCCGCCTTG GCATTATCGC
CGCCGCGCGC GTTTAGCCAC TTACTTTAAC AACAACGACA AGAGCTTAAA ATTGGGCTTT
CGCGCCCTCA GTAGCAAGCA AATCGTACCC ATTAAACAAT GCCCCGTATT GGCCGAGCCA
TTATCGGCAC TGATCAACCC GTTTTCCCTA TTACTGGCGC GCCTTAAAGC CAAGGCAAGT
CTAGGCCATC TCGAATTAAC CCAAGCCGAT AACGGCACCT TTGCGGTATT AAGGGTGACT
AAAGTGTTGC CTGCGGCCGA CATTCGGGCC TTGGCAAGCT TTGCCCTAAC TCAGGGCATT
AATCTGTTGC TGCAAGATGA CAGCGGCGCC CTAACCGATG TGATGACTAT GGCGCCTGCT
GAAGACGAGG GGGCTACCCA AGTTGAACAA TCAGCACTAA CCTTGCCGGA GTATGCTTTG
AGTCAAGGCC AAGTCAGTTG CCAATTTACC CCGGGTAACT TTGTGCAGGT CAATGCCGAG
GTTAATCAGC GCATGGTGGA GCAAGCGGTC AATTGGCTTG ATCTTCAAGT GGGAGAGCGA
GTATTAGATT TATTCTGCGG CGTGGGGAAT TTCAGTTTAG CGCTGGCAAA CCGAGGCCAG
AACCTAGATG GGCTAGAAGT CATTGGGGTA GAAGGCGTGC CCGAAATGGT GCAGCAAGCT
CGGGAGAACG CCAAGCGCAA TAATCTGGCG AACTTAAGCT TTTATCATGC TGACTTAAGT
GCTGACCTTT CAAATGAAAA ATGGCTTGGG AAAATCGATA AGCTATTATT AGACCCCGCC
AGAGCCGGCG CGTTTGAAAG CTTGCAATGG CTACAGAAAA TGAAACCTAA AAAAGTGGTT
TATGTGTCTT GTAACCCAGC AAGCTTAGCC CGTGACTCTA GCGTGCTGCT CAGCCAAGGT
TACCAGCTTA AGCAGTTGTC CATGATAGAC ATGTTCCCGC AGACGCACCA CATTGAAGCT
ATGGCGCTAT TTGAAATTGC CACTTAA
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| Protein sequence | MAQFFKEKAN KSKQLSPKLS LNVTQLDHLG AGMAQHQGKV VFIPQALPGE RVSVQLTDQK
KSFAKAKLIK IEQQSPERAD ASCPHYGHCG GCDLQHLALD AQQNHKQQSL NELMVKFSGS
PVIDPQVQAA PLVSPPWHYR RRARLATYFN NNDKSLKLGF RALSSKQIVP IKQCPVLAEP
LSALINPFSL LLARLKAKAS LGHLELTQAD NGTFAVLRVT KVLPAADIRA LASFALTQGI
NLLLQDDSGA LTDVMTMAPA EDEGATQVEQ SALTLPEYAL SQGQVSCQFT PGNFVQVNAE
VNQRMVEQAV NWLDLQVGER VLDLFCGVGN FSLALANRGQ NLDGLEVIGV EGVPEMVQQA
RENAKRNNLA NLSFYHADLS ADLSNEKWLG KIDKLLLDPA RAGAFESLQW LQKMKPKKVV
YVSCNPASLA RDSSVLLSQG YQLKQLSMID MFPQTHHIEA MALFEIAT
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