Gene Sden_1147 details

Gene Information

• Locus tag: Sden_1147
• Symbol: ribH
• ID: 4017320
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 1318454
• End bp: 1318933
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637955137
• Product: 6,7-dimethyl-8-ribityllumazine synthase
• Protein accession: YP_562156
• Protein GI: 91792505
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0054] Riboflavin synthase beta-chain
• TIGRFAM ID: [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000000256341
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGTAG TTCAAGGCAA TATCGAAGCG AAAAATGCCA AAGTGGCCAT CGTTGTGTCG 
CGTTTCAACA GTTTTTTAGT TGAAAGCTTA CTAGACGGGG CGATTGATAC CCTAAAGCGT 
TTTGGTCAAG TCGCTGATGA AAATATCACA GTGGTACGAG TACCAGGCGC AGTCGAATTA 
CCCCTTGCGG CTCGTCGCGT TGCGGCTAGC GGTAAGTTTG ACGGCATTAT TGCACTGGGT 
GCAGTGATCC GTGGTGGTAC TCCTCATTTT GATTTTGTTG CCGGTGAATG TAACAAAGGC 
CTAGCTCAAG TTGCACTTGA GTTCGACTTG CCTGTGTCAT TTGGCGTGTT AACTACAGAT 
ACCATAGAGC AAGCTATCGA GCGCTCAGGT ACTAAAGCGG GTAACAAGGG CGGCGAAGCG 
GCTCTGGGTT TACTCGAAAT GGTTAACGTG CTGCAACAAT TAGAACAACA GCTGTCATAG 

 

Protein sequence

MNVVQGNIEA KNAKVAIVVS RFNSFLVESL LDGAIDTLKR FGQVADENIT VVRVPGAVEL 
PLAARRVAAS GKFDGIIALG AVIRGGTPHF DFVAGECNKG LAQVALEFDL PVSFGVLTTD 
TIEQAIERSG TKAGNKGGEA ALGLLEMVNV LQQLEQQLS