| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1074 |
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| Symbol | |
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| ID | 4016790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1227947 |
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| End bp | 1229023 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955066 |
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| Product | spermidine/putrescine-binding periplasmic protein-like protein |
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| Protein accession | YP_562085 |
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| Protein GI | 91792434 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGATAA TGAAACGCCT TGGTATTAGT TGCCTGCTGT GGGCAGGAGT GTTGTTTTCG
GTAAATGGTT TCGCCGTTAC CCTCAATGTG CTCGAATGGG AAGGCTACAT CAGTCCATTT
AAAGAAGAGT TCACCACCTA TGCTAAATCT AAAGGCATGG ATGTGGAGCT CAATATTATC
GAGCCTTACA TTACCGATCC CGAACTCATT TTTAATAAGA TGCGGGTTCA GGCAGCCGAT
GTGACCACCC CCACCCATAA CTATTACAAG ATGAATCAAG ATAAGTTAAT TCAAGTGCTG
CAGCCCATAG ACTTCAGTAA GTTATCAAAT TACAGCAAGG TATTAGCCTC ATTACGATCC
AGTCAATATG ATCAGACCAA AGCGGGTAAA TACTCGGTTC CTCTTCTCGG TGGCTCTTAT
GGTTTAGCCT ACAACGCCAG TAAGCGTGCT GAGCCAAAAT CATGGGAAGA ACTATGGTTA
CCTGAAAACA AAGGTAAATT TGCCATCACG GGAGATCAAT TCGAAGCCAA CATTTATACT
ACAATGTTGG TGCTCGGCTA TCCCCCAGAA AGCTTCTACG ACATAGACTC GACAAAATTT
GATATACCCA AAATCGAAGC TAAATTGAAC ACGCTCGTGG CTAATGCCGA TTCATTTTGG
GGCGGCATGG CAGATGTAGA ACGCATGAAA GAGCTAGAGC TAGTGACCAC TTACTGGTTT
GCCGTGGCAG CCGCCAATCA AGGCGGGCAA AATTGGAAAT TGGCAGATCC TAAAGAAGGT
CAAACCGTTT GGTTAGACAC CTTGGCCATA GGCAAGCATT TAAGCGGCGA AAAACTCGAT
GCTGCGTATT TGTTGATGGA TTTTATGATA AGCGAGCCGG TGCAGAAACG CTTACTTGAG
ATGTACGGCT CTATTATAGT CAATGGTGAT ACCGTTAAAT TACTCGACCC CCAGCTCGCT
AAAGATGCCA GAGTCGGTGA TGAGTCCTTT TTCTCAGAGC AATACCTTTG GCGTCCACTA
AATACGCGAA CCCGTAATAT TTACAAGCAA ATGTGGACCA AGGCTAAGGG GAAATAA
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| Protein sequence | MMIMKRLGIS CLLWAGVLFS VNGFAVTLNV LEWEGYISPF KEEFTTYAKS KGMDVELNII
EPYITDPELI FNKMRVQAAD VTTPTHNYYK MNQDKLIQVL QPIDFSKLSN YSKVLASLRS
SQYDQTKAGK YSVPLLGGSY GLAYNASKRA EPKSWEELWL PENKGKFAIT GDQFEANIYT
TMLVLGYPPE SFYDIDSTKF DIPKIEAKLN TLVANADSFW GGMADVERMK ELELVTTYWF
AVAAANQGGQ NWKLADPKEG QTVWLDTLAI GKHLSGEKLD AAYLLMDFMI SEPVQKRLLE
MYGSIIVNGD TVKLLDPQLA KDARVGDESF FSEQYLWRPL NTRTRNIYKQ MWTKAKGK
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