| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0972 |
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| Symbol | |
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| ID | 4016742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1112941 |
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| End bp | 1113855 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637954962 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561983 |
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| Protein GI | 91792332 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCCCAA ACTTAACCGC TGGCTTTTGT CGCTCCCTTG CTAGGTCTTT AGTCGTCACC
TATAGTTTAA AAAAAACTCG CTGGAATAAC ATGACAAGTC TAGCTCAAGC CCTTATTGCT
ATAGGCCTTG TACTCTTACT GTTATCACTT AAACCTACAT TTGCCATTAG CCAGCTGCCC
ACAGAGCAAC AAAAAGGCTG GCGAATACTG TTTATGCTTA TTTGCTGCTT TGTTTTGGGT
TATTTAAGCT TTCTTTTTAT GCTGATGAAT CAAGCGATCA CCCCACTAGA GATGGTGGTC
GCTTGGGTTT TTTGTGGCGG CGGCGCCTTC GTTTATCTCA TCACCAGAAT GAGTCAAAAA
ACCATTCACC TGCTCATCAT TAACGCCAAC ACTAACCTTC ATAGGGCTCA TCATGATGAA
CTCACCCTGT TGCCCAAACG GCAACTCTTA TATCAGGCAA TGGATCAGCA TATACAAGCA
AACAAGCCGT TTTGCTGCAT GATGCTGGAT TTAAATGATT TTAAGCAAAT TAACGACCGC
TTGGGTCATG ATTGTGGCGA TTGGGTTCTG ATCTCAGTGG CCAAGCGTAT TCAAAGCATC
ATGCCCAAGG ATGCCATGGT GTCAAGGCTT GGTGGTGATG AACTGGCGGT GATTATTAAC
GGCCGCTATA GCGAATGTGG CGAGGATATG GCCAAAGACA TCCAATTAAG CGTTAGCCAA
GCGATTTCCT ATAACGAAGA ATCGCTAACC ATAGGTGTCA GTATTGGCAT CGCCGAATTC
CCCCTCCAAG GGCAAACTCG TGAACAATTG CTCAAGCAAG CCGACATCGC CATGTACCAT
GCTAAGCGCA ACAAAAAAGC TTATGCCTTG TATCAGCAAA CATTTGAAGT AGAACTTGAA
AAAAACGACG CCTAA
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| Protein sequence | MTPNLTAGFC RSLARSLVVT YSLKKTRWNN MTSLAQALIA IGLVLLLLSL KPTFAISQLP
TEQQKGWRIL FMLICCFVLG YLSFLFMLMN QAITPLEMVV AWVFCGGGAF VYLITRMSQK
TIHLLIINAN TNLHRAHHDE LTLLPKRQLL YQAMDQHIQA NKPFCCMMLD LNDFKQINDR
LGHDCGDWVL ISVAKRIQSI MPKDAMVSRL GGDELAVIIN GRYSECGEDM AKDIQLSVSQ
AISYNEESLT IGVSIGIAEF PLQGQTREQL LKQADIAMYH AKRNKKAYAL YQQTFEVELE
KNDA
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