| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0914 |
|---|
| Symbol | |
|---|
| ID | 4016820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1042522 |
|---|
| End bp | 1043292 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637954904 |
|---|
| Product | EAL domain-containing protein |
|---|
| Protein accession | YP_561925 |
|---|
| Protein GI | 91792274 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACTA TACCGATAAT TTACGACCGA TTTTCTTGCA ACAATTGTGC TGATAAAGGC
AAGCTTGATT TCGATTTTAC CATGGCCTTT CAACCCATCA TTAACTGTAA AACCCGCAGC
ATATTTGGCT ATGAGGCATT GGCGCGAGGC TTAAATAACG AGTCTGCATT CTCTGTGATA
TCTCAAGTCA ATGATGACAA CCGCTATCTA TTTGATCAGC TGTGCCGAGT GAAAGCCATT
GCCCTAGCCG CTAAGCTTAA GCTCGATACT ATCCTGAGCA TAAACTTTCT TCCCAACGCC
ATCTACAAAC CTGAACGCTG CATTAGAACC ACCTTAGAAG CCGCCAAACT GTATAATTTC
CCCACCAATA AAATCATGTT TGAGTTTACG GAGAGCGAGA ACATGGGTGA TGCCAATACT
GTTAAACGTA TCCTCGAGTA CTACAAGGAT ACAGGCTTTA TCACCGCCAT TGACGATTTT
GGCTCTGGCT ATGCTGGCTT GGGATTACTG GTAGATTTTC AGCCCAAGAT AATCAAATTT
GATATGAAGC TTATTCGTAA TATTGACCAA GACAAAGTTC GCCAGGCTAT CGTTCACAAT
TGTCTGAATT TATTTCGACA ACTCAATGTA ACTCCGTTAG CTGAAGGAGT AGAAACAATT
GAAGAAATGG TGTGGCTACG AGATGAAGGT ATAGAGTTAA TGCAGGGTTA CTTGTTCGCC
AAACCCGGTT TTCAATGCCT ACCTCAAGTC AATTTTAATG AATTACCTTA A
|
|---|
| Protein sequence | MDTIPIIYDR FSCNNCADKG KLDFDFTMAF QPIINCKTRS IFGYEALARG LNNESAFSVI
SQVNDDNRYL FDQLCRVKAI ALAAKLKLDT ILSINFLPNA IYKPERCIRT TLEAAKLYNF
PTNKIMFEFT ESENMGDANT VKRILEYYKD TGFITAIDDF GSGYAGLGLL VDFQPKIIKF
DMKLIRNIDQ DKVRQAIVHN CLNLFRQLNV TPLAEGVETI EEMVWLRDEG IELMQGYLFA
KPGFQCLPQV NFNELP
|
|---|
| |