| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0885 |
|---|
| Symbol | |
|---|
| ID | 4016986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1009734 |
|---|
| End bp | 1010405 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637954875 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_561896 |
|---|
| Protein GI | 91792245 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATTCAG ATAAAGGTCA TTACTCGATG AAATCCTTAT TACGCGCCCT CACCTTAGGT
GCAGTTTGCA CCCTACTCAG TGTCAATGTT CTCGCCAAAC CCATAGCTAT GGATGAGCTA
TCTGTCATGC CCTTGATGAA TGGGCAAACT TTACCTGAGC TCACACTCAA TAATATTGAC
GGTAAAGCGG TCAACTTAAC TGAACTCGTC AGCCAGAAAC CCACGGTATT TTTCTTTTAT
CGCGGCGGTT GGTGTCCATT TTGTAACGCG CAAATGGGCC AATTGAAAGC CATTGAGCCA
AAGTTGATTG AGATGGGATT TCAATTAGTG GGGATTTCAC CGGACACGCC GGCGCAATTA
AAAGCCTCAG TAAGAGATAA CAAGCTGGAT TACTTGCTCT TGTCTGATGC CAATATGGCG
GCGTCACAAG CCTTTGGTTT GGCGTATTTC ACAAGTGCCG AGGTTACTCA AATTTATACC
CAGAAAATGA AACTTGAAAA CCCACTCTGG GTTACCCCTC TTGGTGAAAA ACGCTTAGTC
TTGCCTGTGC CTGCGGTTTA CTTGATTGAC ACAAACGGAC TGGTGCATTT TCAATACATC
AACCCAAATT TTAAAGTCAG GCCTGCACCA GAGCTTATTT TAACCGCTGC CAAGTTGCTC
AACGCTCACT AG
|
|---|
| Protein sequence | MYSDKGHYSM KSLLRALTLG AVCTLLSVNV LAKPIAMDEL SVMPLMNGQT LPELTLNNID
GKAVNLTELV SQKPTVFFFY RGGWCPFCNA QMGQLKAIEP KLIEMGFQLV GISPDTPAQL
KASVRDNKLD YLLLSDANMA ASQAFGLAYF TSAEVTQIYT QKMKLENPLW VTPLGEKRLV
LPVPAVYLID TNGLVHFQYI NPNFKVRPAP ELILTAAKLL NAH
|
|---|
| |