| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0773 |
|---|
| Symbol | |
|---|
| ID | 4016723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 893447 |
|---|
| End bp | 894031 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954758 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
|---|
| Protein accession | YP_561786 |
|---|
| Protein GI | 91792135 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.176438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAAT GGATAAGCCT AGCAGTCGCG TTAGTACTCA GCTTCAGCGC ACAGGCCATA
GATATTCAAC CAGACACCTT GTACCCTAAA GTCGAATTTG ATACCAGCAT GGGCAAAATT
GTGGTCGAGC TAGATCGCAC CCGCGCACCG ATCACCGTTG ATAATTTCCT TACCTATGTG
GTCAAAGGCA GCTACAACAA TACCTTGTTC CATAGAGTCA TTGCCGATTT CGTGGTGCAA
GGTGGCGGGA TCACGCCAAA ATTAGTCGAA ATACCCGTGG CTGATTTTAT TGTGAACGAG
TCAGGTAATG GTTTATCTAA CTCCTTAGGC ACTATCGCTA TGGCTCGTGA TAACGAACCT
CATTCAGCCA ATAGCCAGTT CTACTTCAAT GTGGCTGACA ACAAGAAACT GGATCCATCA
AAACGCCGTT GGGGTTACGC CGTTTTCGGT GAGGTGGTTG AAGGCATACA AATACTGGAA
GCCATGGCCT TAGTGGAAAC CCAACACAAT ACTAAGCTCA ATTGGCCCGA TGTTCCCGTG
ACGCCAATTA TATTGAACAG CGCCAAATTG CTTCCGCGCC AGTAA
|
|---|
| Protein sequence | MYKWISLAVA LVLSFSAQAI DIQPDTLYPK VEFDTSMGKI VVELDRTRAP ITVDNFLTYV
VKGSYNNTLF HRVIADFVVQ GGGITPKLVE IPVADFIVNE SGNGLSNSLG TIAMARDNEP
HSANSQFYFN VADNKKLDPS KRRWGYAVFG EVVEGIQILE AMALVETQHN TKLNWPDVPV
TPIILNSAKL LPRQ
|
|---|
| |