| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0575 |
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| Symbol | |
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| ID | 4016548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 650744 |
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| End bp | 651985 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637954560 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_561588 |
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| Protein GI | 91791937 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATC AAACGTTCAA TGCTTTTTTT GCCGCTTCTT CAGTGGGCGC TAGCCTGCTA
TTTTCTAGTC TATTCGCATT AGCGGCCCTT GGATTTCCAG CCCAAGCTGG AGAAGGTCAT
GGCCATGATG CAACACCTAA GGCCAGTGTG AATGCACAGC CGCTAGCCGC CAACATCTCG
GGTGAAAAAC AAGAGGCTCA AGCTCATGGG GAAGAGAAGC ATGGCAATGA AGCCCTTAAG
CTGACTCAAG TTCAGCGTAA CCTTGCAGGC ATAGAAGTCA GCGAGTTACA GGCGCAGCAT
TTTAACCTCG CCTCCTTTGC CACCGCTACC CTGCTGGTGG ACAGGGATAA GACAGCAAGC
CTAGCCGCCC AGCTGGAAGT GAAAGTGATT GCTCGCCACG TAGTGCCAGG GCAAAGGGTT
GAAGCGGGGC AGCCGTTACT GACCTTGGGC GGCGCTGCTG TGGCGCAGGC GCAGGCGGAT
TACATCAATG CGGCGTCCGA GTGGGACAGA GTAAAACGCT TGTCGAATGG CGCCATCAGT
GACAGTCAGC GGCTGCAGGC ACAAGTGAAT GCTGAGCTAA AACGGGCGAT TTTAGAATCC
CTTAAGATGA CGAAAAGCCA AATTGCAACC CTTGCAACTT CACCCAGTGC TATCGGCAGT
TATGCTTTGT TGGCGCCCTT TTCAGGCCGA GTACAGCAAG ATATCGCCAT GTTAGGCCAA
GTTTTGGCGG CAGGCACGGC CTTAATGCAG CTCACCGATG AATCCTCACT CTGGGTTGAG
GCTCAATTGA GTCCCGCGCA AGCAGACACT GTGGACATTG GCACCCAAGC GTTAGTGCGA
GTGGAAGATA AAACCCTGCA AGGGGAAATC ATAGGTCGCT CCCATGAGAT AGACAGCATC
ACGCGCACCG AGCAAGTCTT GCTGCGTATC GCTAACACTG AGCACCAATT ACATGCGGGT
CAGTTTGCCG AGTTATACCT CACATCAGGG GCGGGCGCGA AAGCTAATCC CATGGGCATA
GTCGTGCCCG ATGCGGCGCT AACCCGCAGT GGTGACGGTG ATTGGCAGGT ATTTATTGAA
GATGAAGACG GCTTTGAAGC GGTAGAAGTG CAAGTGGTGG AGCGTCAGCG CGGGCTAAGC
CTAGTGCGTG GTTTAGATGA TAACGCCAAG GTGGTGGTGT CTGGCGCCTT TTTCTTGGCC
TCGGAACTGG CAAAGTCTGG TTTTGATATC CACAACCACT AA
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| Protein sequence | MKNQTFNAFF AASSVGASLL FSSLFALAAL GFPAQAGEGH GHDATPKASV NAQPLAANIS
GEKQEAQAHG EEKHGNEALK LTQVQRNLAG IEVSELQAQH FNLASFATAT LLVDRDKTAS
LAAQLEVKVI ARHVVPGQRV EAGQPLLTLG GAAVAQAQAD YINAASEWDR VKRLSNGAIS
DSQRLQAQVN AELKRAILES LKMTKSQIAT LATSPSAIGS YALLAPFSGR VQQDIAMLGQ
VLAAGTALMQ LTDESSLWVE AQLSPAQADT VDIGTQALVR VEDKTLQGEI IGRSHEIDSI
TRTEQVLLRI ANTEHQLHAG QFAELYLTSG AGAKANPMGI VVPDAALTRS GDGDWQVFIE
DEDGFEAVEV QVVERQRGLS LVRGLDDNAK VVVSGAFFLA SELAKSGFDI HNH
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