| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0543 |
|---|
| Symbol | |
|---|
| ID | 4016916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 616756 |
|---|
| End bp | 618360 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637954529 |
|---|
| Product | ATP-binding region, ATPase-like protein |
|---|
| Protein accession | YP_561558 |
|---|
| Protein GI | 91791907 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTAA GCACTAGCCA ACTGTTAAAG AGCCCTATCG GCCGGCGACT CATGCTGTCA
ATCGTGCTAT TCAGCTCATT TATTACTTTA TTGACCACTG GCTATCAGCT CATTAATGAC
TATCGAACCG ATGTCCAGCG CATTGACCAA GCCTTCTCCA GCATTGAAAA GGCAAACTTA
GAGGTATTAG CGGCCAGTAT TTGGGTTATC GATGAAAAGT TGATTAACAC CCAATTAAAG
GGCTTGAGTC AATTATCCGA CATTACTTAT GTATCGATTA AAGATGACAG TGAACAAGAA
TGGCAACTGG GCACAAAAAA AACCGCCAAC ACAATCGAAA AACAATACGA TTTACTTTAT
CGTCCCGCCG ATAATACTAA GGTCGGGACC TTAGTGGTGC AGGCTGACCT AAATTTTATT
TATAACAAAC TCTATGACAA AGCCATTTTG ATCTTATTGT CCAATGGGGT TAAGACCTTT
CTTGTGGCCG GTTTTATTCT TTTTTTAGTG TGGATCCATG TCACCAAACA CTTATTAAAC
CTCAGCCAAT ATTGCAACGA AATCGATTTT AAAAAGCCTT TCACCCCACT CAAATTTGAG
CGAAAAGCCT TCAAGGATGA ATTCCATTCG GTAGCGCAAG CCATTAATCA CATGCAACAT
CAGGTTCGAT TGTCGCTGGA TGAATTGCAA AATTCTAAAT TCCAATTACA AGATTCGTTA
GCCGACCGGG AGCGGTTACT GGAAATTGAA CGCAGCTATA AACAAGAACT GGCAGCTCAA
GTTAAAGCCC AAACGGCAGA ATTAGAGCTC TCTTTAGCTA GGCTCAAGAA AGCCCAACAA
GTCATGGTCG AGCAGGAAAA AATGGCCGCT TTGGGCGGCT TAGTCTCTGG GGTTGCCCAT
GAAATCAACA CCCCTATTGG CATTTGCTTA ACCGCTGCCA GTGCTCAGCT GGTGCATGTT
GATGAACTCA TCCTATTAAT CCACAGCGAT GATGCCACCT TAGAGCAAAT CAACGGCATA
CTGCTCGATT ACCAACAGAG CTGTAAGCTC ATCATCAACA ACATCACTAA AGCCAGCAAC
CTAATTCAGA AGTTTAAAAC CATTGCCGCA GAGCAGCAAA ATGAAAAGAG TGTACAGTTC
AATATCTATC AGCTGTTAAT GGGGGTTCTC GATGCCAGCA AGCTTATCCA CCCAACACTG
GATGTCGACA TAGGCATAGA AGTGGATAAA AACTTATGCA TTACCGCAAA CTACAGCTTA
GTTAATCAGA TTGTAACCAA TATAGTGTCG AATATTTATT ACCATGGTTT CAATGAAATA
GATAAACCTA AGCTGATCAT AAAGGTCGAG ATTGCACAGA TGCAGGCGAG CATTGCCTTA
CACAACAACG GCGTTGCGAT CCCAGAAGAA GTGTCGGCCC ATATGTTCGA GCCTTTCTTT
ACTACCGCTC GTCATAAAGG AGGCACAGGG CTTGGTTTAT CGGCGGCATT TAATGCCGCA
ACCTTACTCA AAGGCAAGAT AGATTATCAG GCAAACTCCC CTTTGGGCGG CCCACTATTT
ACCCTGTTGT TCCCCATAGA GCGTCAACAT GAATATGTAA TCTAA
|
|---|
| Protein sequence | MKLSTSQLLK SPIGRRLMLS IVLFSSFITL LTTGYQLIND YRTDVQRIDQ AFSSIEKANL
EVLAASIWVI DEKLINTQLK GLSQLSDITY VSIKDDSEQE WQLGTKKTAN TIEKQYDLLY
RPADNTKVGT LVVQADLNFI YNKLYDKAIL ILLSNGVKTF LVAGFILFLV WIHVTKHLLN
LSQYCNEIDF KKPFTPLKFE RKAFKDEFHS VAQAINHMQH QVRLSLDELQ NSKFQLQDSL
ADRERLLEIE RSYKQELAAQ VKAQTAELEL SLARLKKAQQ VMVEQEKMAA LGGLVSGVAH
EINTPIGICL TAASAQLVHV DELILLIHSD DATLEQINGI LLDYQQSCKL IINNITKASN
LIQKFKTIAA EQQNEKSVQF NIYQLLMGVL DASKLIHPTL DVDIGIEVDK NLCITANYSL
VNQIVTNIVS NIYYHGFNEI DKPKLIIKVE IAQMQASIAL HNNGVAIPEE VSAHMFEPFF
TTARHKGGTG LGLSAAFNAA TLLKGKIDYQ ANSPLGGPLF TLLFPIERQH EYVI
|
|---|
| |