| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0482 |
|---|
| Symbol | |
|---|
| ID | 4016665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 554658 |
|---|
| End bp | 555596 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637954468 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_561497 |
|---|
| Protein GI | 91791846 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACAT TGACTATGAC AAATAATGCC GCCCGCGCCG CTCAGCCTTC CTATGTAGTT
CTCCCCAAAA ATGAACTGGC ACCCGCTACC GTGGCTGATT TTCTTATGCA GCATTTTTCA
CAAATTGCGC CACAGGTTTG GAGGCAGCGC TTAAGTGAGG GTAAAGTGCA TTGGAAAGAT
GGTGAGTTAA TTAATGAGCA CACCGCCTAT CGGCCTATGG CGCGGGTTTA TTATTATCGT
GAAGTGGCCT TGGAAACTAA GGTGCCGTTT GATGAAGTCA TATTGCACCA AGATGAGCAT
GCCATCATAG CCTATAAGCC GCACTTTTTA CCTGTCACTC CAAGTGGAAA CTATGTCAAT
GAGTGCCTAG TGCACAGATT AAGGATTAAA ACCGGGATAG ACACCATAGC GCCTGCCCAT
AGGCTAGACA AGGATACTGC AGGCATAGTG CTATTGACCC TAAACCCTGA GGTTCGCCAT
CAATATCATA ATTTATTTAC TCAAGGCCAG ATAAGTAAGC ACTATCATGC CTTAGCTAAA
TTAACCCCTG AGATCCACGC CGCACATCAA GGGGGAGGAT TGCGTCTTCC ATTAACTTGG
ACGGTTAAAA ATCGTCTCGG CCCTGCCACA CCGAGCTTTT TAATGCAGCT GGTGGAGGGG
GAGGCTAACA GTCACTCAGA AATTCAATTG ATTGCCATAA AAGAGGATAT GGGCTTATTC
GCCTTAAGCC CCATTACCGG TAAGACCCAT CAGCTGAGGG TACATATGCA AAGCTTAGGG
GTGCCGATCC TCAATGATAG GTTTTACCCA CAACTGCAAC CTAAAGGCGT GGATAACTTT
GATAAGCCGC TGAAATTGTT GGCACAAAGG CTTAAATTTG TTGACCCTAT ATCAGGCATA
GAAAGAGACA TTCAATGCCA AGGGTTTAGT TTGGATTAA
|
|---|
| Protein sequence | MPTLTMTNNA ARAAQPSYVV LPKNELAPAT VADFLMQHFS QIAPQVWRQR LSEGKVHWKD
GELINEHTAY RPMARVYYYR EVALETKVPF DEVILHQDEH AIIAYKPHFL PVTPSGNYVN
ECLVHRLRIK TGIDTIAPAH RLDKDTAGIV LLTLNPEVRH QYHNLFTQGQ ISKHYHALAK
LTPEIHAAHQ GGGLRLPLTW TVKNRLGPAT PSFLMQLVEG EANSHSEIQL IAIKEDMGLF
ALSPITGKTH QLRVHMQSLG VPILNDRFYP QLQPKGVDNF DKPLKLLAQR LKFVDPISGI
ERDIQCQGFS LD
|
|---|
| |