| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0381 |
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| Symbol | |
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| ID | 4017515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 434897 |
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| End bp | 436303 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637954366 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_561399 |
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| Protein GI | 91791748 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.034849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAT ACACACATAC TGGTCTTAAA TTAACAGCAG TAGCCCTGGC TGTTATGCTG
TCATCGGCAG CACAAGCACA AACGCTTGAG CAAGCGGTTG CCCATACTTT GGATACTAAT
CCAGAGTTAC GCATTGCCTT TAACCGCTTT AAAGCCCGAG AAGAGCAAGT TAATCAAGCT
TACGCGGGTT ATATGCCAAC TGTAGATGTT TCTGGCGGCT ACGGCTGGGA ACAAACTGAC
AGCGTATCAA CACGACGTAA AGCAGGGCAA GGGGATGTCG ATTCTGACGG TAAAATCGAC
CTTGAACGCG GCGAACTTGG CGTCAGCATC AAGCAAATGC TGTTCGATGG TTTCTATACC
AGCAGCGAAG TCGATCGCTA CTCCTATGAA GCCAGTTCGG ATCAGTGGGC TTTATTTGCC
GCTGCTGAAG ATATTGCATT GGAAGTGAGT AAGGTCTACC TAAAATTTAT TCACACAGAG
CAAGTGCTTA CTCTTGCAGA GAAAAACTTG CAAAGCCATA AAGACATCTA TGATCAAATT
AAACAAAGAA CCGACTCTGG CTTAGGTTCT ATTGCAGATT TATCGCAGAT ATCGGGCCGT
TTAGCGCGAG CCAATGCCAA TGTAATTTCA GCCAAAAACA ACATGTTTGA TGCTAAGGCA
CAATTTGTTC GTATCGCTGC CGCTGCCCCT GAAAACCTAA TCATGCCAGT ACCGGATGCA
GACATGTTAC CTGCAGATAT GGGCTTGAGC CTTAAAATGG CCCAAGATAA CCACCCTATC
CTTAAGTCTG CTGCCAGTGA CATTGGTGCA GCAAAACATG AGCGTGAGTC AGCCCAAGCT
AACTATTACC CTAAAGTAAC GTTAGAGCTA AACGGTGGTT GGAATAACAA CACCAATGGT
GAAGACGGTT ATAGTGCTTT CAATAGCCAA AACGTCAATG GTTACACCAA TGACTTAGCC
GCCATGGTTC GAGTGAAATA TAACTTGTTT GCCGGTGGTA AAGATTTAGC TCGCGAGAAA
GAAACCGCAT ACAAGATCAA TGAAGCGAAA GAAATCCGTG AACGTGCTCA TCGTCAAGTC
ATTGAAGGGG TCAATTTAGC CTGGAATGCC TATGAATTAC TGGCACCACA AAAGCAGTAC
ATACGCGATC ATGTTGTTGC AGCCAAAGAT ACCCAAGTGG CTTATTCACA GCAATTTAAC
TTAGGTCAAC GTACCCTGCT CGATTTACTC GATACTGAAA ACGAGTTATT CGAAGCCCGT
AAAGACTATT TACAAGCAGA ATATGATGAA ACTGTTGCCC AGTATCGTGT ACTTAATGCG
ACTGGACAGC TATTGGAATC TTTACGTGTC ACTCGCCCAT CGGTATGGCA GGGAGAGCGT
CACTATGAAG GAGGAGTAGG CGAATGA
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| Protein sequence | MNKYTHTGLK LTAVALAVML SSAAQAQTLE QAVAHTLDTN PELRIAFNRF KAREEQVNQA
YAGYMPTVDV SGGYGWEQTD SVSTRRKAGQ GDVDSDGKID LERGELGVSI KQMLFDGFYT
SSEVDRYSYE ASSDQWALFA AAEDIALEVS KVYLKFIHTE QVLTLAEKNL QSHKDIYDQI
KQRTDSGLGS IADLSQISGR LARANANVIS AKNNMFDAKA QFVRIAAAAP ENLIMPVPDA
DMLPADMGLS LKMAQDNHPI LKSAASDIGA AKHERESAQA NYYPKVTLEL NGGWNNNTNG
EDGYSAFNSQ NVNGYTNDLA AMVRVKYNLF AGGKDLAREK ETAYKINEAK EIRERAHRQV
IEGVNLAWNA YELLAPQKQY IRDHVVAAKD TQVAYSQQFN LGQRTLLDLL DTENELFEAR
KDYLQAEYDE TVAQYRVLNA TGQLLESLRV TRPSVWQGER HYEGGVGE
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