Gene Sden_0337 details

Gene Information

• Locus tag: Sden_0337
• Symbol: leuD
• ID: 4020353
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 377452
• End bp: 378057
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637954318
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_561355
• Protein GI: 91791704
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.999258
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGCAT TTACAGCCCA TAGCGGTTTA GCCGTGGCCA TCGACAGCGC TAATATCGAT 
ACCGATCAGA TAATCCCTAA GCAGTTCCTG TCAAAGGTCA CTCGAGATGG TTTCGGAGTG 
CACCTATTTC ATGACTGGCG TTATTTAGAT GATGCCGGCG AAAAACCGAA CCCAGAATTT 
GTCTTGAATC AATCGCGTTA TAAAGGCGCT TCCATCTTAT TGGCTCAAGA GAACTTTGGC 
TGTGGCTCGA GCCGTGAACA TGCCCCTTGG GCGTTGGCTG ATTTTGGTTT AAGAGTGGTG 
ATCGCCCCAA GTTTTGCCGA TATATTTTAT GGTAATGCCA TTAACAATGG CTTGTTGCCC 
GTTGTCTTGA CTCAAGCTCA GGTGCAGCAG TTAATGGATG AAGTGCAAGG GGAGTTGGGC 
GCGCAGGTGA GTGTCGATCT TCAATTGCTT CGAGTCATAT CGCCCAGCGG TGCTGAATTT 
CCTTTTAGCT TAGTCGAATC TGCGCGGCAT AAATTGCTAA ATGGGTTGGA CGCCGTAGGG 
GAAACCTTAA CCCATGGGCA GGCTATTTCT GCCTATGAGG CTAATATTCC GGCTTGGTTA 
GCCTGA 

 

Protein sequence

MQAFTAHSGL AVAIDSANID TDQIIPKQFL SKVTRDGFGV HLFHDWRYLD DAGEKPNPEF 
VLNQSRYKGA SILLAQENFG CGSSREHAPW ALADFGLRVV IAPSFADIFY GNAINNGLLP 
VVLTQAQVQQ LMDEVQGELG AQVSVDLQLL RVISPSGAEF PFSLVESARH KLLNGLDAVG 
ETLTHGQAIS AYEANIPAWL A