| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0164 |
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| Symbol | |
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| ID | 4017828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 187204 |
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| End bp | 191436 |
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| Gene Length | 4233 bp |
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| Protein Length | 1410 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954140 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_561184 |
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| Protein GI | 91791533 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.564754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTTAAACAG CAAAGTAAGA CTGAAGAATT TAACGGTATA
AAAATCGGTT TGGCTTCGCC AGACTTGATC CGTTCTTGGT CATTTGGTGA AGTTAAAAAG
CCAGAAACCA TTAACTACCG TACATTCAAG CCAGAACGTG AAGGTTTGTT CTGTGCGCGT
ATCTTCGGTC CAGTGAAAGA TTACGAATGT TTGTGCGGTA AGTACAAGCG TTTGAAGCAC
CGTGGTGTGA TCTGTGAAAA GTGTGGCGTA GAAGTTACCC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATTGATCT TGCAAGCCCA GTTGCCCATA TTTGGTTCTT GAAATCACTT
CCGTCACGTA TCGGCTTAAT GCTGGATATG ACGTTGCGTG ATATTGAACG CGTACTGTAT
TTCGAATCAT TTGTCGTTAT CGAGCCTGGC ATGACCACGC TTGAGCGCGG CCAAATGCTG
ACTGAAGAAA CGTATCTTGA TGCGTTAGAA GAATACGGTG ATGAGTTCGA AGCTAAGATG
GGTGCCGAAG CAGTGTTAGA ATTGCTACGT GCTATCAACT TAGAAGAGCA GATCGAGCAA
ATGCGTGAAG AGTTGCCGTC AATCAACTCT GAAACCCGTC GCAAGAAGGT CACTAAGCGC
CTTAAGCTGA TGGAAGCATT CTTCACTTCT GGCAACAAGC CAGAGTGGAT GATCTTAAAA
GTATTACCGG TTCTGCCACC TGATCTACGT CCATTAGTGC CGTTAGATGG TGGTCGTTTC
GCGACGTCAG ATCTTAACGA TTTGTACCGC CGCGTGATCA ACCGTAACAA CCGTTTAAAG
CGTCTGTTAG ATTTAGCTGC GCCTGACATT ATCGTACGTA ACGAAAAGCG TATGTTACAA
GAGTCAGTTG ATGCGCTATT GGATAACGGT CGTCGCGGTC GTGCTATTAC CGGTTCTAAC
AAGCGTCCGC TTAAATCTCT TGCCGATATG ATCAAGGGTA AGCAAGGTCG TTTCCGTCAG
AACTTACTTG GTAAGCGTGT TGACTATTCA GGCCGTTCGG TAATTACCGT AGGTCCAACT
TTGCGTCTGC ACCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAGCTGTT CAAGCCTTTC
ATTTATGGCA AGTTAGAAGG TCGTGGCTTA GCTACTACCA TCAAAGCGGC TAAGAAAATG
GTTGAACGTG AGCAGGCAGA AGTATGGGAT GTGCTAGACG AAGTGATTCG TGAACATCCA
GTCATGCTTA ACCGTGCACC AACACTTCAC AGATTAGGTA TTCAAGCATT TGAACCTGTG
CTGATTGAAG GTAAAGCAAT TCAATTGCAC CCGTTAGTTT GTGCGGCATA CAACGCCGAC
TTCGACGGTG ACCAAATGGC TGTTCACGTA CCATTAACGC TTGAAGCTCA GTTAGAAGCT
CGCGCGCTGA TGATGTCGAC TAACAACATT CTGTCACCTG CTAACGGTGA GCCTGTTATT
ACACCGTCTC AGGACGTTGT ACTTGGCTTG TACTACACCA GTCGTGAGCG CATCAATGGC
CGCGGAGAAG GCATGGTCTT CGCTGATGTG TCTGAAGTAG AGAAAGCTTA TGCCACTGGC
GTAGCTGAAA TACATGCTCG CGTTAAAGTA CGTATTACAG AAACGAGCAT AGATGCTGAT
GGTGAAAAAA CTAAAGCAAC GCGTATTGTA GATACCACGA TTGGTCGTGC TTTACTGTCG
CTTATTCTGC CTGAAGGCTT ATCTTATGAT TTGGTTAACC AGAACATGGG TAAGAAGCAG
ATTTCTAAAT TGCTCAACAC TTGTTACCGT CAATTAGGCC TTAAAGATAC GGTTATCTTT
GCTGACCAAT TGATGTATAC CGGTTTCCGT TTTGCAACCA TTTCAGGTGC CTCTGTGGGT
ATCGATGACA TGGTTATTCC TGACGAGAAA TACACCTTAG TTGCCGATGC GGAAGCGGAA
GTTCTTGAAA TTCAAGAGCA ATTCCAGTCT GGTCTAGTAA CTGCCGGTGA GCGTTACAAC
AAGGTTATCG ATATCTGGGC AAGCGCTAAC GAAAAAGTCT CTAAGGCTAT GATGGAAAAC
CTGTCGGTTG AGACAGTGAT TAACCGTGAT GGCGTAGAAG AGAAGCAAGC TTCGTTTAAC
AGCATCTATA TGATGGCTGA CTCGGGCGCT CGTGGTAGTG CTGCACAGAT ACGTCAGTTA
GCGGGTATGC GTGGTCTGAT GGCAAAACCA GATGGTTCTA TCATCGAAAC CCCAATTACG
GCTAACTTCC GTGAAGGTCT AAACGTACTC CAGTACTTTA TTTCTACTCA CGGTGCACGT
AAAGGTCTTG CCGATACCGC ATTGAAGACA GCGAACTCGG GTTACCTGAC TCGTCGTTTA
GTAGACGTGG CTCAAGACTT AGTCGTCATT GAAGATGACT GTGGTGCTGA GCACGGATTA
ACAATGAAGC CGCTAATTGA AGGTGGTGAT GTTGTTGAGC CGTTGCGTGA GCGCGTACTG
GGTCGTGTGG TGGCTATTGA TGTTATCAAG CCAGGCAGTG AAGAAATTCT TGCTCCACGT
AACACTCTGC TCGATGAAGC ATGGTGTGAC ATCTTAGAAG AACACAGTGT TGACGAAGTT
ATCGTGCGCT CTGTTATCAC CTGTGAAACA GACTTTGGTG TGTGTGCTGC TTGTTATGGT
CGTGATTTGG CTCGTGGTCA TATCATTAAC CACGGTGAAG CGATTGGTGT TGTAGCTGCT
CAGTCAATTG GTGAGCCAGG TACACAGTTA ACCATGCGTA CCTTCCACAT CGGTGGTGCG
GCATCGCGAG CTTCTGCAGA AAACAACGTT CAAGTTAAGA ACGCGGGTTC TCTGAAGTTA
CACAACGCTA AGCATGTTTC TAACATCGAC GGCAAACTGG TTATTGTGTC TCGCTCGTCT
GAACTTGCCA TTATCGATGA GCTAGGTCGT GAGAAAGAGC GTTACAAGGT GCCTTACGGT
ACTGTGCTTG AGAAATTGGA AGACAGTGAA GTTACAGCAG GCGAAATCAT CGCTAACTGG
GATCCACATA CTCACCCAAT TATCTCTGAA GTTGCCGGTA GCGTGAAGTT CGTTGACATG
ATCGACGGCG TGACCATGAC GCGTCAAACT GACGAGTTAA CCGGTCTTTC TTCTGTTGTG
GTACTAGACG TAGGTGCTCG TACTTCAGCC GGTAAAGAAC TGCGTCCTGC TATTCGCTTA
GTTGGCGCCG ATGGTAATGA CTTAATGATC CCTGGTACTG ATGTACCGGC TCAGTATTTC
TTACCGGGTA ACGCGATTGT TGCTAAAGAC GATAACGCTA AGATCAACGT TGGTGACGCA
TTAGCACGTA TTCCACAAGA ATCGTCTAAA ACACGCGATA TCACAGGTGG TCTACCACGT
GTTGCTGACT TATTTGAAGC GCGTAAGCCG AAAGAGCCTG CAATTCTTGC AGAGATCTCA
GGTACTATTT CGTTCGGTAA GGAAACTAAG GGTAAGCGTC GTCTAGTGAT CACTCCAGCT
GATGGTAGTG AACATTACGA AGAGATGATC CCTAAGTGGC GTAACTTGAA CGTGTTCGAA
GGTGAAAAAG TTGAACGTGG CGAAGTCATC GCTGACGGTC CAGAAGCGGC ACATGACATC
TTACGTCTTC GTGGTATCCA CAACGTAGCA AACTACATTG TGAACGAAGT ACAGGATGTT
TACCGTCTAC AGGGCGTTAA GATCAACGAC AAGCACATCG AAGTTATCAT TCGTCAGATG
CTACGTAAGT GCTTAATCAC CTCAGCAGGG GACACTGAGT TCCTTGAGGG CGAACAAGCA
GAAGTCGCGC GGGTTAAGAT TGCTAACCGT GAGCTCATCG CTCAAGGTAA AACACCTGCA
ACCTTCGAAC GTGAATTACT CGGTATCACC AAAGCCTCTT TGGCGACTGA ATCATTCATC
TCTGCAGCAT CGTTCCAGGA AACCACTCGC GTGTTAACTG AAGCGGCTGT TGGCGGAAAG
AGCGATCAAT TACGTGGTCT GAAAGAAAAC GTAATCGTGG GTCGTTTGAT CCCCGCGGGT
ACCGGTTATG CTTACCATAA GAAGCGTAAC GCGCTTCGTG CTACAGAAGA TGCCAAGAAA
GCGGCAGCTA AAATAGCACC TGCAGTAACC ACTGCCAGCG AAGCTGAGCA GAACCTAGCA
GACCTACTAA ACTTGGCCGG TGGCGAAGAA TAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTTLERGQML TEETYLDALE EYGDEFEAKM
GAEAVLELLR AINLEEQIEQ MREELPSINS ETRRKKVTKR LKLMEAFFTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREQAEVWD VLDEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMVFADV SEVEKAYATG
VAEIHARVKV RITETSIDAD GEKTKATRIV DTTIGRALLS LILPEGLSYD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSVETVINRD GVEEKQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGAEHGL TMKPLIEGGD VVEPLRERVL
GRVVAIDVIK PGSEEILAPR NTLLDEAWCD ILEEHSVDEV IVRSVITCET DFGVCAACYG
RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNAGSLKL
HNAKHVSNID GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEDSE VTAGEIIANW
DPHTHPIISE VAGSVKFVDM IDGVTMTRQT DELTGLSSVV VLDVGARTSA GKELRPAIRL
VGADGNDLMI PGTDVPAQYF LPGNAIVAKD DNAKINVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGSEHYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCLITSAG DTEFLEGEQA EVARVKIANR ELIAQGKTPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDQLRGLKEN VIVGRLIPAG TGYAYHKKRN ALRATEDAKK
AAAKIAPAVT TASEAEQNLA DLLNLAGGEE
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