| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0116 |
|---|
| Symbol | |
|---|
| ID | 4017200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 125905 |
|---|
| End bp | 126948 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637954089 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_561136 |
|---|
| Protein GI | 91791485 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCA ATAATCTCAT GCAACTGGTC TCGCATACCC AAGCTTCATC CTCACCCCGC
AAGTCTAGGG GATATTTATG CTTGCCTTCA TGGCTTTGGT TAACCCTACT TAGTAGCTTT
TCCTTAACTG AAACAAAAGC TTCAACCATA ACCAGTGTGG AACAAAGTGC GAAAGCCGCC
CCGCAGGAGC TAATCGAAGG GGGGCATGAG CATCAACACA TCCCCCTCGC TTCTCAGCGG
ATAAGACTGC CTCCGCCGCC ATTAAATATG GCATCCAGTT ATGATTATTT TTATGACTTG
CTTGAATTGA TTTTGATAAA AACTCAGGCC GAATATGGCC CTGTGATATT GGAAACGCTT
CCGAGCGCTC TATCTCAATC CCGTGGCTTA AGCTCACTCA ATTCTGGTCT CATTGATATC
ATCTGGGCAG GCACAAATAT AGAAAGAGAG CAGCGCTATA CTCCCATACG TATTCCATTG
GTTGGTGGCT TATTAGGCAT GCGAGTCCCA GTGATTAAGC GAGTTCGGTT AGCCGAATTT
CAAGCCATTC GTATGCCAGA GCAACTTAAA AAACTCACCG CCTGCCAAGG CTCACAATGG
CCAGACTCTG ACATACTAGA AGCCAACGGT TACAAGGTTG AGCGGATTAT CATGTTCGAA
CTCATGTATA CCATGTTGAA TCATGACCGC TGTGATTATT TCCCTCGAGG AATAAACGAG
GTATTTTCCG AACTCGATGG CCCAGAACGA GATGAGTTAA TGGCGTTTGA AGGCATCTTG
CTGCGCTATT CTATGCCTAT GTACTTTTTC GTTAGTCAGG AAAATGTTCA ACTGGAGCAG
CGCTTGACTT CAGGATTGGA GGCCATGGTG GCTTCTGGGG AACTAAAAAA ATATATCTTG
AGCCATAAGG TGACTCAAGG CATCTTCCCC TTGAGTCGCT ATCATAATAG CCGGATATTC
GAGTTAGTTA ATCCAAGTTT GCCAGCCAGC TTAGTCGATC GTCCTGAGCT TTGGATTAAG
CTAAAAAAAA CCTCAAAACA ATGA
|
|---|
| Protein sequence | MDINNLMQLV SHTQASSSPR KSRGYLCLPS WLWLTLLSSF SLTETKASTI TSVEQSAKAA
PQELIEGGHE HQHIPLASQR IRLPPPPLNM ASSYDYFYDL LELILIKTQA EYGPVILETL
PSALSQSRGL SSLNSGLIDI IWAGTNIERE QRYTPIRIPL VGGLLGMRVP VIKRVRLAEF
QAIRMPEQLK KLTACQGSQW PDSDILEANG YKVERIIMFE LMYTMLNHDR CDYFPRGINE
VFSELDGPER DELMAFEGIL LRYSMPMYFF VSQENVQLEQ RLTSGLEAMV ASGELKKYIL
SHKVTQGIFP LSRYHNSRIF ELVNPSLPAS LVDRPELWIK LKKTSKQ
|
|---|
| |