| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0053 |
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| Symbol | |
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| ID | 4017252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 63778 |
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| End bp | 65097 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637954026 |
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| Product | secretory protein YscJ/FliF |
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| Protein accession | YP_561073 |
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| Protein GI | 91791422 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.259806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTA TGGAAAAAAT AACAAAGAAA ATGCGGTTCT TTATCGCTGG CATCAGCTTA
ATGTTGCTGA CCTTGATAAC ATTGTGGTGG GTTATTCAGG ATTCTAAGCA AGTGCTTTTT
TCTGGTTTGT CGCAAGCGAC ACTGACGGAA TATACTGCCA AGTTAGAGGC CAGTGGAATA
GGCTATCAAG TGGAAGGTAC ATCTATTTTT GTTGCTAGCT CTGACAGCAA TCAGGCCAGA
GTTGTGGCCA TGGAAGATAG TATCCAGAGC AATAATGTGA CTGGCTTTGA ACTGTATGAA
AATAGTGATT TAGGTGCTAC AGAAAGAGCG CAGCATGCAA ATTATCTGCG GGCACTCCAA
GGGGAAATTG AGCGGACTTT AACTGGGTTT AATTACATTA AGAAAGCTCG AGTTCATCTG
ACGTTGCCAC AAAAACGCCT TTTCATGAGT CAAAATCAAT TAACAAAAGC CTCGGTTACT
TTGTTCACCG TCGACCATTA TCAACCAAGA ACTATAGACA TAGAAGCGAT AAAACAGCTA
GTTGTGTCAG CGGTTGAAGA TTTGACAATA GATCAAGTTG TTGTGATTGA CGGGGCTGGT
CAATGGGGTG TTTTTGAACC TCAAGGTGAT CTTAGCTCCC CCAATTTAGC ACTGCGTAGA
AGTACAGAAT CATATTTAGA GCAGAAGGTG TTGCAAGTAT TAGTGGCATA TTTTTCAGCG
TCTAGTATAT CTGCTGCCGT TGCGGTTGAG CTGAATACCG ACACAGTTAA GATACATGAG
ACTAAGGCAA TAAAAGGGGA TGGCAGTCAA GGTTTGATTA GCTCTGAAAC TAAGTTTGAA
GAAACCCACT TAAGTGACGA CAATAAGCCG GGCTCTAAAA CTCTCAGAAA TGAGGTTACT
TATGCCCACG GAGCCTTGAC ACAGGAAACT GAGCAAGCTC CAGGGCAAAT ATTGAGATTA
ACGGCTGCGG TTTCGATTAA TGCTGAAGTC GCCCCGGAGT TGCAGGCGCA GATTTCAGAA
TTAATAAAGA ACACCATAGG TTTTGATAGT CAGCGTGATG ACAGTATTTC AGTTAGTTTC
TTTTATCTGC CCAAAGTAGA ACCACTACCC GTCACTCCGA TGGCTGTAGA ACCCGTTGTA
GTGAAAACGG TGGAAAGTAA TACCTGGTGG CCTTTTTTAC TTATTGGTTT AGGTACGTTA
TTTAGCCTAT CTACAGGTAT GTTTTATTTG GCGAATAAAA GGGATAGCAC AGAGCAGCAG
TTACTTAATC AAATAAACTA TTTGTTTGAT AATGAGCAAA AGGCGCCAGA AAATGCATGA
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| Protein sequence | MSSMEKITKK MRFFIAGISL MLLTLITLWW VIQDSKQVLF SGLSQATLTE YTAKLEASGI
GYQVEGTSIF VASSDSNQAR VVAMEDSIQS NNVTGFELYE NSDLGATERA QHANYLRALQ
GEIERTLTGF NYIKKARVHL TLPQKRLFMS QNQLTKASVT LFTVDHYQPR TIDIEAIKQL
VVSAVEDLTI DQVVVIDGAG QWGVFEPQGD LSSPNLALRR STESYLEQKV LQVLVAYFSA
SSISAAVAVE LNTDTVKIHE TKAIKGDGSQ GLISSETKFE ETHLSDDNKP GSKTLRNEVT
YAHGALTQET EQAPGQILRL TAAVSINAEV APELQAQISE LIKNTIGFDS QRDDSISVSF
FYLPKVEPLP VTPMAVEPVV VKTVESNTWW PFLLIGLGTL FSLSTGMFYL ANKRDSTEQQ
LLNQINYLFD NEQKAPENA
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