| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sdel_0794 |
|---|
| Symbol | |
|---|
| ID | 8592328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurospirillum deleyianum DSM 6946 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013512 |
|---|
| Strand | + |
|---|
| Start bp | 790841 |
|---|
| End bp | 792163 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | |
|---|
| Product | type I secretion membrane fusion protein, HlyD family |
|---|
| Protein accession | YP_003303860 |
|---|
| Protein GI | 268679429 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00028021 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGT ATAATGAAAA TGATTTGGAG TTTATGTCAA GTTTGAGTGA AGCAGTGCTT
CAAAAAGCAC CTAACTCTTC ACGTAAAATG ATTTGGATAA TGGTGATTTC TATTGGGTGG
CTTCTGCTTT GGGCGAGTAT TGCGGAGATT GATGAATTAA CCAGAGGAGA AGGGAAGGTG
ATTCCTTCAC AGCAACTTCA AGTGATTCAA AATTTAGAAG GGGGCATTGT TTCTGAGATT
TTGGTCAAAG AGGGTGATCG GGTTAAAAAA GGGCAGATTT TACTTAAAAT TGATGATAAA
AATTTTGCCA GTTCGTATGG CGAAAACAGG CTTCGTTATA TTGAGCTCAA AGCAAAATCC
ATGCGCTTAG AAGCCGAAGC CAATGCTGAA GCGTTTGAGG TTTCACAAGA TTTGGATGAG
CAAATGCAAC AACAAATTGT GTATGAAAAA AGTTTATATA ACTCTAATCA AGAACAACTG
ACAAAAACAT TTCAAATTTT AAATGAGCAG ATTAAGCAAA AAGAGAGTGA ACTGACTGAA
CTCGAATCCA AAGTGGCGCA ATTAAGTACC AGTTATGATT TGGTTAAAAA AGAGATCGAC
ATTATGGCAC CATTGGTCAA AAAAGGCTTG GTCTCAGAGA TGGAGTTTTT ACAGTTAAAA
CGCCAGACAA ATAATGTTCA AGGCGAACTT CAAACCAGTA GATTGGCTAT TCCCCGTGTG
AAATCAGCCA TTGCAGAAGT TCAAAATAAG CGTCTTGAAG CCGAGCTAAA TTTTCAAAAC
AGAGCTAAAA AAGAGTTAAA CGAAATTATT GCAGAAATGT CACGCTTAAA TGAAGCCCAA
ACCAGTTTAG AAGATAGAGT AAAAAGAACG TTGGTTCGTG CCCCTGTGGA TGGAACGGTT
AAGCAACTTT TAGTGAATAC CGTCTCAGGC GTTGTCAAAC CTGGTATGGA TATTTTGGAG
ATTGTTCCGA GTGAAGACAC CCTTTTGGTT GAAGCAAAAG TTAAACCCTC TGATGTTGGG
TTTTTGCGTT TAGGGCTTGA TGCGATGGTG AAATTTACAG CGTATGATTT TTCGATTTAT
GGTGGTTTAG CGGGGAAGGT AGTTTTTATT AGTGCTGATA CCATTACCAA TGAGCGGGGT
GAGACGTACT ATATTGTGCA TATCAAAACC GATAAAAATC ATTTAGGTAC GGTTGAAAAA
CCTTTGGAAT TAATGGTCGG TATGACAACA AGTGTGGATA TTTTAACAGG GAAAAAGACC
GTGTTAGATT ACCTTTTAAA ACCCATTTTG AAAGCTAAAC ATAACGCCTT AAGGGAGCGC
TAA
|
|---|
| Protein sequence | MAKYNENDLE FMSSLSEAVL QKAPNSSRKM IWIMVISIGW LLLWASIAEI DELTRGEGKV
IPSQQLQVIQ NLEGGIVSEI LVKEGDRVKK GQILLKIDDK NFASSYGENR LRYIELKAKS
MRLEAEANAE AFEVSQDLDE QMQQQIVYEK SLYNSNQEQL TKTFQILNEQ IKQKESELTE
LESKVAQLST SYDLVKKEID IMAPLVKKGL VSEMEFLQLK RQTNNVQGEL QTSRLAIPRV
KSAIAEVQNK RLEAELNFQN RAKKELNEII AEMSRLNEAQ TSLEDRVKRT LVRAPVDGTV
KQLLVNTVSG VVKPGMDILE IVPSEDTLLV EAKVKPSDVG FLRLGLDAMV KFTAYDFSIY
GGLAGKVVFI SADTITNERG ETYYIVHIKT DKNHLGTVEK PLELMVGMTT SVDILTGKKT
VLDYLLKPIL KAKHNALRER
|
|---|
| |