| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4005 |
|---|
| Symbol | |
|---|
| ID | 3967424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 5041100 |
|---|
| End bp | 5042596 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637923102 |
|---|
| Product | formylmethionine deformylase |
|---|
| Protein accession | YP_529472 |
|---|
| Protein GI | 90023645 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.182317 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAATA TTACTATTGT TGGTGGCGGC ACGGCGGGTT GGATTACTGC AAATATACTA
GCCAAGAGCT GGGCCCACCA GAATGTAAAT ATTACGGTAA TCGAGTCCCC CACTATTCCA
ACCATTGGTG TAGGTGAAGG TTCAACACCG GCCCTCAAAG GCTTTTTTGA CTTTCTAGAA
ATACAAGAAA GTGAGTGGAT GAACAAATGT AATGCCACAT ATAAAAATGG AATACGTTTT
AATGGTTGGA CAAATAAACC AGATTTTAAA AGCTACTTTC ATCCATTTCC CTCGGCATTA
GATTACACGT ATTTACCCGA GTATTTTAAC CACATTGCTT CCCGTCGAGC GGGTTACGCA
AACGCTACAC AATCTGAAAA TTATTTTTTA GCGGCAAAAT TAGCCGCAGA AAAAAAATCG
CCATATGTAA TAGATAACCT AGGTAAATTG AAAAGCGAGG TAAACTACGG CTACCATTTC
GATGCAGCTA AGCTCGCCGA ATTTCTTCAG CAACAGGCCA CAAATCTTGG TGTAATACAT
ACGGTTGCTG CTGTGCAAGG GGTTACGCAA GGCGAACAGG GTATAGCCAA AATTCATTTG
AGTAATGGAG AAAGCCATAG TGCCGACCTG TATATAGATT GCACAGGCTT TTCTGCTAAA
TTAATAGAGA AAACACTTGG CGCCAAATTT ATAAGTTACG CCGACCACCT TTACAACGAT
GCTGCAGTGG CAATACCAAG TTTGCATTGC GAAAATGAAA CCTTAATTAG TAGCGAGACT
GTGGCTACCG CAATGGAAAA CGGTTGGGCC TGGCAGATAC CCCTGCAAAA CAGAGTGGGC
AATGGCTATG TATATAGCAG TCAATATTGT AGCGCCGAAC AAGCGGAGCA AGAATTACGT
ACAAAGTTAG GCCTAATGGA TTCAGCAGTG GAGGCCAAGC ACCTAACAAT GCGCGTTGGG
CGCAGAGACA AGCATTGGAT AAAAAACTGT GTAGCAATAG GTTTATCGCA AGGCTTTATA
GAGCCGTTAG AAGCCACAGC CCTTGCGCTT GTACAATTCA GTGCGGCTAA GCTAGTAGAC
TATTACTCAA TAGAATCCAA TATTGATAAC ACTAAACGAG ACGACTATAA CAGAGTTATT
AATAATCAAT TTGATGGTAT TAAAGATTAC ATTGTGGCCC ACTACAAAAC CAATTCACTT
ACTCACACTA AATACTGGTG CGACAATCGC GCTCACTTAG ATAAGTTATC CCCCTCTTTG
CAACAAATAT TCAAATGCTG GATTAGCGGC GCCGATTTAT CTGCGGAGAT TCAGCGTCAA
AATATTCAAA AATACTACCC CGTTGTATCT TGGTATTGCT TATTGGCTGG AATGGGTATG
TTTCCCGAGG CTATTTATCA AGCAAACGCA GTGGCGCCAA GCTGTACTAA AATGCAAGCA
ATTGCGGGGT CGGCACTGTC TCAGCTAGAG TGTATGCAGC ACTTTAAAAC CCTCTAA
|
|---|
| Protein sequence | MRNITIVGGG TAGWITANIL AKSWAHQNVN ITVIESPTIP TIGVGEGSTP ALKGFFDFLE
IQESEWMNKC NATYKNGIRF NGWTNKPDFK SYFHPFPSAL DYTYLPEYFN HIASRRAGYA
NATQSENYFL AAKLAAEKKS PYVIDNLGKL KSEVNYGYHF DAAKLAEFLQ QQATNLGVIH
TVAAVQGVTQ GEQGIAKIHL SNGESHSADL YIDCTGFSAK LIEKTLGAKF ISYADHLYND
AAVAIPSLHC ENETLISSET VATAMENGWA WQIPLQNRVG NGYVYSSQYC SAEQAEQELR
TKLGLMDSAV EAKHLTMRVG RRDKHWIKNC VAIGLSQGFI EPLEATALAL VQFSAAKLVD
YYSIESNIDN TKRDDYNRVI NNQFDGIKDY IVAHYKTNSL THTKYWCDNR AHLDKLSPSL
QQIFKCWISG ADLSAEIQRQ NIQKYYPVVS WYCLLAGMGM FPEAIYQANA VAPSCTKMQA
IAGSALSQLE CMQHFKTL
|
|---|
| |