| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3950 |
|---|
| Symbol | |
|---|
| ID | 3967215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4980179 |
|---|
| End bp | 4980883 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637923047 |
|---|
| Product | putative porin |
|---|
| Protein accession | YP_529417 |
|---|
| Protein GI | 90023590 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.475883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAA AAATTCTTGG CGTAGCGGTT GCTTTGGTTG TTTCTAATGC CGCTATTGCT
GACTCATACA GAACAGAAAT TACTGCTGGC GCTACCGACA GCGATGCAAC TGATACAAGC
TTGGACTTAG GTATTCGCTA CCACTTTCAA GAAGTAGACA CTTCAGGTAA GCCCTTAGCC
GAAGCAGCAT TTTTAAATAA ATCATCAAAT GTTTACGCCA AAACTGCCAA TATTGCAGGT
GATGGCGATA CAGCAACTAC AGCTGGTGTT GAGTTTTACT TACCAAACAC CATGTTCTAC
GGTGGTTTCG ATGTAACTAA AACTGACGAC AACACTTCTT GGACTGCAAC ATTAGGTGTA
ACACCTATTG ATGGTTTATT GGTTACCACT TCTTATGAAG AAGATGTTGA TTACGACCTT
AACTTAGATG CTAAGTACGT GACTACGTTG GGCAATGGTC ATGCAATTAA TTTAGAAGCG
AATGTAATTG ACGGTGAAGA GGACGTTTTG TGGTCTCTAG GTGGTGATTA CTACCTAAGC
AACAATACTA GCCTCGGTTT AGCTTTTTCC GATTATACCG GTAACGATAC AGATGTGACT
GTACGTGGCC GCCATTTCTT CAGCAACGAG TTTTTCGCTG GTGCTAGCTT CACTGCAGCA
GACAACAACG ACACTATTGC GCTAGAAGCA GGTCTACGTT TCTAA
|
|---|
| Protein sequence | MIKKILGVAV ALVVSNAAIA DSYRTEITAG ATDSDATDTS LDLGIRYHFQ EVDTSGKPLA
EAAFLNKSSN VYAKTANIAG DGDTATTAGV EFYLPNTMFY GGFDVTKTDD NTSWTATLGV
TPIDGLLVTT SYEEDVDYDL NLDAKYVTTL GNGHAINLEA NVIDGEEDVL WSLGGDYYLS
NNTSLGLAFS DYTGNDTDVT VRGRHFFSNE FFAGASFTAA DNNDTIALEA GLRF
|
|---|
| |