Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3895 |
Symbol | |
ID | 3967120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4916037 |
End bp | 4916528 |
Gene Length | 492 bp |
Protein Length | 163 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637922992 |
Product | sigma-24 (FecI-like) |
Protein accession | YP_529362 |
Protein GI | 90023535 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATTTC AATACCGAAC CTACGTTAAC CAGTACCAAC GCCTTGTATA TAGCAAGGCC TTGCACATGC TGGGTAACAG TACCGAAGCA GAGGACGCAT GCCAAGAGGT ATACGAGCGC CTGTGGAAGC ATATAAGCAA GGTAGAAGAC CACCACGCCA AAGCATGGTT GCTACACGTA ACCCGCAATG TGTGTATAGA CCTGCTGCGC AAACGCACAG ATACCCAAGC GCTAGATGAA GAGCTTGTAT GCGAGCGCAG CGACGGCAAC CCAAGCAACG CACTGGCAAA CAGCCAATTA AGCCATTGGC TTACACATGC CTTAAGCAAA ATGAAAGAAC CGTACAAAAG CCTAATTCAA ATGGCCGAGA TACAGCAACA AAGTGTGAAA ACTATTGCCC AACACCTTGG GTTAAGCGAG AACCAAGTAA AGGTGTACAG CCACCGCGCC CGCCAACAAT TGCGCGCACT TTTGCAAGGG GTAGACCTAT GA
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Protein sequence | MEFQYRTYVN QYQRLVYSKA LHMLGNSTEA EDACQEVYER LWKHISKVED HHAKAWLLHV TRNVCIDLLR KRTDTQALDE ELVCERSDGN PSNALANSQL SHWLTHALSK MKEPYKSLIQ MAEIQQQSVK TIAQHLGLSE NQVKVYSHRA RQQLRALLQG VDL
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