| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3848 |
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| Symbol | |
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| ID | 3966997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4850308 |
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| End bp | 4851180 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637922945 |
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| Product | Pectate lyase/Amb allergen |
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| Protein accession | YP_529315 |
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| Protein GI | 90023488 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4848] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATAA AAATAGTTTT GGTGTTGGCG CTATTACTAC CGGTGTGTGT ATATGCCGGT
AAGCCACTTA TATCTAAGCA TGAATTTACG TTGGAATTTA ATCGGTACCT GGAAGAGAAG
GTTAAGGATT CAGAATTTAG CGTTGTAGGT GATCTTCATC TACATGCAGG CGGCATGGAG
GGCTACGAAT TAAATATATA CTTAGATAAT GCCTACGACG TTTACTTATC AGGAGGTCGG
GATATTAAAC TTATTTTTAA TGATCAACTA GAGTCGATAA AAAACCAGAA AAAAACTTTG
TCTAATAGTG ATGTAAAAAG CATACTGCCT GTCATAAAAC CATATACCTA CATTGAATCG
TCTATAGCGC AACTTAAAGA AGCAGGATAC GATAAAGATG ATATTCCACT TTTTTACGAG
AAATTAAATG AAGACCTATA CTTAATGTAT GTGTTTGATT CTGCTGATAG TATGCGTTTT
GTATCGCCTA AAGAGGTTGA AAAACACGGT ATAAAGGATT CTATTCGAGA TATTGCCAGT
AAAAATATTG AGAGCTACTA CTTTAAAATT GAAGCACAAT TACGTGAAAT TGATACTAAA
GGAAATGGCC GAGCATACCT CTTTTTCGCG GATGAAAATT ATGAAGCCTC TATTCTTATG
GGGTTTGGCT ACTTAAAACG CTTAACTCTC GAAATTGATG GTGAACCTGT AGTGTTTATT
CCCGCTAGAA ATGTTGTGCT TATTGTTGGT TCAAACGATT CGAAAGCTAT TGACATGGCG
TCGAGCATTG CTGCCCGAGG GTACAGGGAA CTTGGTTATG CTATATCGCC CTTTGGTTAT
AAGTATCTAG ACGGTAAGTG GTCTCGGTTT TAG
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| Protein sequence | MRIKIVLVLA LLLPVCVYAG KPLISKHEFT LEFNRYLEEK VKDSEFSVVG DLHLHAGGME
GYELNIYLDN AYDVYLSGGR DIKLIFNDQL ESIKNQKKTL SNSDVKSILP VIKPYTYIES
SIAQLKEAGY DKDDIPLFYE KLNEDLYLMY VFDSADSMRF VSPKEVEKHG IKDSIRDIAS
KNIESYYFKI EAQLREIDTK GNGRAYLFFA DENYEASILM GFGYLKRLTL EIDGEPVVFI
PARNVVLIVG SNDSKAIDMA SSIAARGYRE LGYAISPFGY KYLDGKWSRF
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