| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3831 |
|---|
| Symbol | |
|---|
| ID | 3966942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4828990 |
|---|
| End bp | 4831038 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637922928 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_529298 |
|---|
| Protein GI | 90023471 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTT TACGTAATTT AGATATAAAG CCAAAAATAC TAGCCAGTAC TCTAGGCATT
GTATTTGTTA CCACGCTGGT AATTGATGTT GCTATTTTTG CAATGCAGTA CCATACAGCC
AAAACAAACT TAGATGCACG CTTAAATATT GAAGCGAATA TTATTAGCCA GAATATTTCT
GCTTCTGTAC TGTTTGATGA TGAAAAAACC ACGTCAGAAA TTCTCTCTTC GTTTAAATCT
GACCCCGCAA TATTAAAAGT AGAAGTACTA GATTTAGCCG AAAAAGTATT TTCAGAGCAC
GTTACTAAAG ATGGGTATAT TGTAGGGGGC GCTGATTTCT CGATAAGTAA ACCTATTGTG
TTTAGTGGCG ACGAAATTGG TACACTGGTG GTTTATGTTT CTGATGCAGA GATAAGCTCT
GGTATATCCA AAACCATTTT ATTCAGTATA ACTACGCTAG TTATTGCATT GGGGGTGGCG
TTTTTATTGT CGTTGGCTGT ACAGGGGATG ATATTTGAAT CCATTCTCGC GTTGCATAAC
ACCTCGCAGC GAGTTGCCAA AACCCGCGAT TACAGTTTGC GCGCAGAAAT ATTCAGTGAA
GATGAAATAG GCAGGTTGGC AAAAACATTC AACAGCATGC TTGAGCAGGT AGAGCAACGC
GATGCGATGC TTGAAAAGCA AGTAAGTCAT CGCACTCTAG AGTTAGAAAA ACTTGCAGAA
GAATTTCGTT TTCGCGCGTT TCACGATAAC CTCACCGGCT TGCCAAACCG CGCCTTATTA
AACGAGCGCT TTGGCTTATG CATTGAGCAC GCCCGCCGCT GTGGTAACAA GTTTGTGTGC
TTGCTGCTAG ATTTAGACGA CTTTAAAACC ATTAACGACA CCAAGGGTCA CGATTATGGC
GATGAGTTAT TGATTGGTGT GGCGCAAAGG TTAAAAGCTT CTGTGCGGGC AGAAGATTTA
GTGTGCAGGC TGGGTGGCGA TGAGTTTATT ATTTTGGCCA CCGATATAGA AACCGAGTTT
GATGCGCGCC AAATAGCAAA TAATATTCTG TTTGCGTTAA GTGAAGACAT TGTAATTAAA
GACGATAAAA TTAAAACCGC TGTTTCGATT GGCGGCGCCA TTTACCCGCA GCATGGCGAA
ACAGTGGGTG TGCTTAAGCG CCACGCCGAT GTGGCCATGT ACCATGCTAA AGACGGTGGT
AAAAATAGGT TTAGTTTATT TTCGCACGGT ATGCAGGAAG AAGTGCACTA CCGCTTGATG
ATTCAACGCG ATTTAGAGCC CGCCATTTTA GATAATCAAT TAATTATTTA TTTTCAACCC
AAAGTGCTGG CAGAAACCGG CGAGGTGGCA GGTTGCGAAG CGCTGGTGCG CTGGCAGCAC
CCGGAAGAGG GTTTTTTAAC GCCAGATAAA TTTATACCCT ATGCAGAAGA AACACCTCTT
ATTCGCGAGA TTGACTACTA CGTAATAAGA GAGTGCTGCA AAAAATTAAA AGAATGGGCT
GCTAGGTTTG ATAAACCCGT ACCTATTGCC GTGAACTTAT CGGGTAGGCA TTTTCGCTCT
TTTAAAATTG TTGAAGTGCT AAAAGAAGCC GTTGCCAGCG CAGGTATTAG CCCCGATTTA
CTGGAAATAG AAATTACCGA AGCGGTGCTT ATTGCCGACC CAGACAAAGC GCAAAAAGTG
GTTCACGCAA TTAAATCTAT TGGCTTTACC ATTAGCTTGG ATGATTTTGG CACAGGCTAC
TCATCGCTTA ATTATTTGCG TACCCTACCA ATTGATATTA TCAAACTAGA TAGATCGTTT
ATTGCCAATA TAGATACCAG TGAGCAAGAT AGAAGGCTAA CGCGAGGGAT TACATCATTA
GCAAAAGGCT TAGATTTAAC TATGGTGGCG GAAGGCGTAG AAACCGAAAG TCAACTGCAA
ACATTATTAG ATTTGGGCTG CCATTGTTTT CAAGGTTACT ACTTCTCTAA GCCCGTTCCC
GAAACCGAAT TTTTAGCGTG GCATAAAAAA TATAACAATG CCTTGGGGAA TAATCATAAA
GTAGGGTGA
|
|---|
| Protein sequence | MSFLRNLDIK PKILASTLGI VFVTTLVIDV AIFAMQYHTA KTNLDARLNI EANIISQNIS
ASVLFDDEKT TSEILSSFKS DPAILKVEVL DLAEKVFSEH VTKDGYIVGG ADFSISKPIV
FSGDEIGTLV VYVSDAEISS GISKTILFSI TTLVIALGVA FLLSLAVQGM IFESILALHN
TSQRVAKTRD YSLRAEIFSE DEIGRLAKTF NSMLEQVEQR DAMLEKQVSH RTLELEKLAE
EFRFRAFHDN LTGLPNRALL NERFGLCIEH ARRCGNKFVC LLLDLDDFKT INDTKGHDYG
DELLIGVAQR LKASVRAEDL VCRLGGDEFI ILATDIETEF DARQIANNIL FALSEDIVIK
DDKIKTAVSI GGAIYPQHGE TVGVLKRHAD VAMYHAKDGG KNRFSLFSHG MQEEVHYRLM
IQRDLEPAIL DNQLIIYFQP KVLAETGEVA GCEALVRWQH PEEGFLTPDK FIPYAEETPL
IREIDYYVIR ECCKKLKEWA ARFDKPVPIA VNLSGRHFRS FKIVEVLKEA VASAGISPDL
LEIEITEAVL IADPDKAQKV VHAIKSIGFT ISLDDFGTGY SSLNYLRTLP IDIIKLDRSF
IANIDTSEQD RRLTRGITSL AKGLDLTMVA EGVETESQLQ TLLDLGCHCF QGYYFSKPVP
ETEFLAWHKK YNNALGNNHK VG
|
|---|
| |