| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3598 |
|---|
| Symbol | |
|---|
| ID | 3966460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4557518 |
|---|
| End bp | 4558126 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637922695 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_529065 |
|---|
| Protein GI | 90023238 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0742] N6-adenine-specific methylase |
|---|
| TIGRFAM ID | [TIGR00095] RNA methyltransferase, RsmD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.547416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0837793 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGGGATT TAGAGGACAC GCTTTTGCGT AAAAATAATC AAAAAAATGC GGGTTCGAGT
ATTCGCATCA TTGCCGGCGA TTGGCGCGGG CGCAAATTAC CCGTTGCCGA AGTGGATGGC
CTGCGCCCCA CCGGTGATCG CGTACGCGAA ACCCTGTTTA ATTGGCTGCA GTTAGATATA
AGCGACGCAC GCTGTTTAGA CCTATTTGCA GGTACCGGTG CGCTGGGTTT AGAGGCCCTA
TCGCGCGGTG CCAGCGAAGT GGTTTTCACC GAGTTAGATG CCAAAGCACA GCAGCAACTA
CAGACAAACC TAACCACATT ACAGCCGCAC GGCGGGGTAT TAAAACGCAT GGCCGCCCTC
GACCTGCTTA AGCAGCCCCC CGCCACCCCC TACGATATTG CCTTTATCGA CCCACCTTTT
GCCCTTAACC TGTGGGACGA CACCCTCAAA GCGCTAACTC AAGCACCTTG GCTAAGTGAA
CACGGGTTAA TTTATGTGGA ACACCCCAAA CGCACGGCAA TAACATTGCC CAATGGCTGG
CAAGAGCGTA AAAGTAAAAC CTCGGGGCAG GTAACTTACT GTCTGCTAGA GCGAATAGAA
GGCGCGTGA
|
|---|
| Protein sequence | MRDLEDTLLR KNNQKNAGSS IRIIAGDWRG RKLPVAEVDG LRPTGDRVRE TLFNWLQLDI
SDARCLDLFA GTGALGLEAL SRGASEVVFT ELDAKAQQQL QTNLTTLQPH GGVLKRMAAL
DLLKQPPATP YDIAFIDPPF ALNLWDDTLK ALTQAPWLSE HGLIYVEHPK RTAITLPNGW
QERKSKTSGQ VTYCLLERIE GA
|
|---|
| |