| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3467 |
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| Symbol | |
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| ID | 3966290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4408444 |
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| End bp | 4410663 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637922564 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_528934 |
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| Protein GI | 90023107 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0929812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAATA GTGTACTGAT TTCCATGGAG GCGCTAATTG CCCATGCTGA TGATTTCTTT
GCGGGTTGTG AGAGTGAATC TTCAGGGTGT GGCGGCGATT TTTTTATGGC GCTAGGCCGG
TTTATGGATA GTGTGGATAT TAAAGAGGGT GAACTTGAAA AAGTTGATGC TCTACATAAT
AAGTTAAAAG CGGTGTTTAA AGAGTATGAG TTTTTATTAT TTCTTATCAA TGTACGTGTG
CGAACTGCGA AAAAAGAAGT ATGCCCTAAC GTGGCATACG ACCAGTGGGC GGCAGATTTA
TATCAGTGGT TTAACGGGCT GAGCGACGAG CGAAAAGCTA TTTGGAACAA TGTGTTAGAA
ATGGCCAATG TGTCGGCCAG TAAACCTTCG CCTGCATGGA AGAAGACAGC TAAGGTTTTA
GTGGAAAACG ATGATATGTT GGTTCGTGAA TTAGAGCTTG TGCTTAATCT GGTGACGAAC
CCCAAGCGAA CTTCGTGCTC GTATTACGCT TGGGATGAGG GATTCGAATA TGTTGCAAAG
CGTACAGGTT ATATATTCCA CTCGAGAAAT ATAGATACTA TAAAAGGCTT AGTTTGGTTG
GGCGGGTTAA TTGAGTCGGA GCGAATGGCC TCCGTTATTA GCAGCGTGGG TGTATCCTGT
ATTAAAAAAA TATCTGGCTA TGGGGCGCGC TCAAAAAAAA TCACTAACGC TACTGTTCTA
ATACTGTCCG AAATGAATTT AGACTCAGCG TTAGGGTATA TAAATCGAAT ATACGATGCA
TGCGAGTATT CGCAAACGAG CTCTTTTATT AAGCGAAAAA CAAAAGAGAT TCGTGATAAT
CTATCCGCGT CGGGTTTTGA TGACGATGAT ATTCATGAAA TTTCTGTTCC GACTATGGAG
TTAAATTCCG ACTTCGAAGT GAGGGAGTGG TTCGACGATA TTGAAGGCAT TATAAAAATA
GAAGATGGTA AGCAAGTAAC GTTGGTTTGG AATAGTGGCT TAAAAACACA TAAAGCAGTA
CCTGCGGAAA TAAAACGTAG TTATGTGGAT GAAATAAAAT CATTTAAAAA ACTACAGAAG
GCCATTGAGG GCAGCTTGTC AGGGTGGCGT ACGCGGATTG AATCCTATTT TCTTAAAGAT
CGAGAGTGGA GCTTCCAACA ATGGAAGGAG CGTTTTATTG ACAATCCTTT GTTGGGTGCC
ATTGCTAGAG ATTTGATATG GGTGTGCTCC CAAGAAAATC AGCAATTCTC CTGCATGTGG
AGGGGGGAGG GTTTGGTAGG ATGCGATGGT GTTAACGTCG CCGTAAAGAA TGAAGTGGCT
CGAATGAAGC TTTGGCATCC TGTCCGGGCG ACACTATCTG AAAGTGAGGC GTGGCAGACT
TTCATTTTTG ATTCGGAGGT GCTTCAGCCA TTCAAGCAGG CGTTTAGGGA GGTGTATGTT
ATCACCGACG CCGAAAGGCA AACGAAAGAA TACTCTAATC GCTTCGCTGC ACATATTATA
TTTCAGCCAA AATTTGCTGC CTTAGCTAAG CAGCGCGGGT GGAGCTTTAA CATGATTGGT
GACGGTGGCG AATACCGCAT GCACAATAAT GCAGAAAAAT CTACACCGCT AGTGAGAGCC
ACCTTCTCTG TGCAGGAGGT AGCCAAAGAG CATCAGACGG CGTCTGGCTA CTACGAATAT
CTAGCTACAG ATCAAGTATT TTTTAGTGTC GATGGCAATC GAATTTGCAT TGAAGATGTT
CCCGAAATTG TGTTTAGCGA ATTGATGAGA GACGTGGATC TATTCGTTGG GGTGTGCAGC
GTAGCAACGG ACCCAGAGTG GAAAGAAAGC GGTATAGAGG GTTATCTGGG TACTTGGGAC
AGTACCGCAT TTGGCGAGCT TACTTCCACT GCCGACACAA GAAAAACCGC CCTACGTCAT
ATTCTTCCTA AGCTCAATAT ATCGAAAAAG TGTGAACTGA TAGAACGCTT TCTAATCGTT
AATGGAGACC AGAGACAATA TAAAATACAT TTGGGAAGCG GCAATATATT GATGAGCCCT
AACGATCAAT ATTTGTGTAT TGTCCCTACT CATTTTTCAG CGAGTATGCG AAAAGTTAAT
AAATTATTTC TTCCGTTTCA GGAGGATTAT ATGCTATCGA TAATTCTAAG TAAGGCGTTT
CTTTTGGCCA ATGATAGCAA AATAAAAGAT GATACGATTC TATCTCAGTT TCAAATCTGA
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| Protein sequence | MKNSVLISME ALIAHADDFF AGCESESSGC GGDFFMALGR FMDSVDIKEG ELEKVDALHN
KLKAVFKEYE FLLFLINVRV RTAKKEVCPN VAYDQWAADL YQWFNGLSDE RKAIWNNVLE
MANVSASKPS PAWKKTAKVL VENDDMLVRE LELVLNLVTN PKRTSCSYYA WDEGFEYVAK
RTGYIFHSRN IDTIKGLVWL GGLIESERMA SVISSVGVSC IKKISGYGAR SKKITNATVL
ILSEMNLDSA LGYINRIYDA CEYSQTSSFI KRKTKEIRDN LSASGFDDDD IHEISVPTME
LNSDFEVREW FDDIEGIIKI EDGKQVTLVW NSGLKTHKAV PAEIKRSYVD EIKSFKKLQK
AIEGSLSGWR TRIESYFLKD REWSFQQWKE RFIDNPLLGA IARDLIWVCS QENQQFSCMW
RGEGLVGCDG VNVAVKNEVA RMKLWHPVRA TLSESEAWQT FIFDSEVLQP FKQAFREVYV
ITDAERQTKE YSNRFAAHII FQPKFAALAK QRGWSFNMIG DGGEYRMHNN AEKSTPLVRA
TFSVQEVAKE HQTASGYYEY LATDQVFFSV DGNRICIEDV PEIVFSELMR DVDLFVGVCS
VATDPEWKES GIEGYLGTWD STAFGELTST ADTRKTALRH ILPKLNISKK CELIERFLIV
NGDQRQYKIH LGSGNILMSP NDQYLCIVPT HFSASMRKVN KLFLPFQEDY MLSIILSKAF
LLANDSKIKD DTILSQFQI
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