| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3459 |
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| Symbol | nrdR |
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| ID | 3966282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4399960 |
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| End bp | 4400430 |
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| Gene Length | 471 bp |
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| Protein Length | 156 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637922556 |
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| Product | transcriptional regulator NrdR |
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| Protein accession | YP_528926 |
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| Protein GI | 161486753 |
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| COG category | [K] Transcription |
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| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
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| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.007384 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATTGTC CCTTTTGCAG TGAAACAGAT ACCAAAGTAA TCGACTCTCG ATTAGTGGCC
GACGGAGCCC AAGTGCGCCG TCGCCGTGAG TGTTTAACCT GTCACGACCG CTTTACCACG
TTCGAAACCG CAGAGCTGGT TATGCCGCGT GTTATTAAGC AAGATGGCAC CCGCGAGCCA
TTCGACGAAG AGAAGTTGCG CGCAGGTTTG CAGCGCGCGT TAGAGAAGCG GCCGGTAAGC
GTAGAGGCCA TTGAATCGTC TGTGCAAAAC GTTAAGCATT ACCTGCAAGC ATTGGGTGAG
CGTGAAGTTA AGTCATTAAT GATTGGCGAG AAAGTCATGG AAGAATTGCG TAGCCTAGAC
CAAGTTGCCT ATGTGCGCTT TGCGTCTGTG TACCGTAGTT TCCAAGATTT AAGCGAGTTC
CAGCAGGAGA TAGACCGCCT GCAAAAACCG AAGCCAAGCC CAATAAAGTA A
|
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| Protein sequence | MHCPFCSETD TKVIDSRLVA DGAQVRRRRE CLTCHDRFTT FETAELVMPR VIKQDGTREP
FDEEKLRAGL QRALEKRPVS VEAIESSVQN VKHYLQALGE REVKSLMIGE KVMEELRSLD
QVAYVRFASV YRSFQDLSEF QQEIDRLQKP KPSPIK
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