| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3368 |
|---|
| Symbol | |
|---|
| ID | 3965917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4295998 |
|---|
| End bp | 4296657 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637922465 |
|---|
| Product | putative D,D-carboxypeptidase-related protein |
|---|
| Protein accession | YP_528835 |
|---|
| Protein GI | 90023008 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1876] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0527224 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTA ATAGCCAATT GCTGGGTACA ACAGAGGAGC ATATCGCCCT TAATCTCGAT
GTGCCGTTAC ATAAAGAAGC TGCAGAGGCT TTTGCCTATT TAAAGAAGCA GGCAAGTGAA
CGAGGGTTCG AATTAAGTTT GGCTAGCGGC TTCAGAAGCT TTGAGCGCCA AATGAAGATA
TGGAACGGCA AGGCGTCCGG CGAGAGGCCG CTATATGATG CGCATGGCGA ATTATTGGAG
GCCAATGAGC TAACCAATAA AGAGAAGGTG TTCGCTATTT TGCGTTGGTC GGCGTTGCCC
GGCGCCTCTC GCCACCACTG GGGTACCGAT GCCGACGTGT ACGATGCCGC AGCTTTGCCT
GATGGAGAAA CATTGCAGCT CACAGTGGCC GAAACAGTGA GCGGTGGTTT TTTTGCCCCA
ATGCACCGTT GGTTAGATAG TTGGCTGCCC GGCTCCGAAT TTTATCGCCC CTACGCATAT
GATCGCGGCG GAGTAGCCCC TGAGCCTTGG CATTTGAGTT ATTTGCCTCT GGCGCGCTCG
TATATGTCTG CACTCACAGT AGACATTATT TATAAGCAAA TCGAAAACTC CAACCTGCTA
TTACAGCGCG AAGTGCTGGC CAATTTCGAC GAGATTTATC AACGTTTTAT TCAGTGTTAA
|
|---|
| Protein sequence | MNINSQLLGT TEEHIALNLD VPLHKEAAEA FAYLKKQASE RGFELSLASG FRSFERQMKI
WNGKASGERP LYDAHGELLE ANELTNKEKV FAILRWSALP GASRHHWGTD ADVYDAAALP
DGETLQLTVA ETVSGGFFAP MHRWLDSWLP GSEFYRPYAY DRGGVAPEPW HLSYLPLARS
YMSALTVDII YKQIENSNLL LQREVLANFD EIYQRFIQC
|
|---|
| |