| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3363 |
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| Symbol | |
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| ID | 3965912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4291382 |
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| End bp | 4293232 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922460 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_528830 |
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| Protein GI | 90023003 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0733668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGAACA CTTTAAAGTA CATTTCCATT CAACACGAGC TGGGTATGTC CATTGGCCTT
GAGTTGCCTC TGCAACCCAT GTTGCGACGC TTCACCAAAG TTGCTGTTCG ACGCTTAAAT
TTAGCCGAAG TGCGACTTTA TTTTTTGCAC GATCGCCAAG GCCAACTCGC ACTACCTAGC
GATATAAAAA GCTCGGTACT CAAGCCCTAC TTTAGCTCTA CCCTTAGCGA AACAGTGGCA
ACACCAGCAG CCCTTAGTGA CACCTTCGAG CGCCTAATCG GCTTCCCTAC CGACTATATA
CTGCAACACG ATGACACCAC AGGTGAGTAC ACCTATTACT ACAACCTTAC CAATATAGGC
ATGATAAGCC TGCACCTATA CCACCAACCT ATACATGCAG AACTACTGGA ACTACTAAAA
CCTATAGTGG AGCGCTTGGC TATTAGCTGC CAGGCGTCTA TTGAGCACCA CCACCTGCTG
CAAGCCATCG ACGACCGCAA ACGCGCCGAA GAGGTGGTGC GCTTTCAATT GCTGCACGAC
GAGCTTACCC AACTGCCCAA TAGACGCTCG TTTATGCGTC ACCTTGACGA ATTAAACTCA
ACCTATAACG CGCGCAAATT AAAAGCAGCA GTGTTGTTTA TCGATTTTGA CCGCTTTAAA
ACCGTTAACG ATACACTGGG GCACGCCGTT GGTGACTCGC TGCTGCAGGC CATTGCCAAA
ACCTTTATAA AGCTCGTGCG CTCCCACGAA ATGGTTGCTC GGTTAAGCGG CGACGAGTTC
GTCATTGTTT TAAGTGAAAC CGAGCAACAA AACCAAAGCG TTTACCAAAT AGTGGAAAAC
ACCCTCAGCA ATATTCAGCT AGCGTTTTCT AACCCCCTGC AAGCTGGCGA ACACTTGCTG
CATATTACCC CCAGTATTGG AGTCGAGTTT TTCCCCAATA AAAATTACAC TTCAGAGCAG
ATACTGCGTC ATGCCGATAC GGCCATGTAT GTAGCTAAAT CGCAGGCTCC CAACTCGGCG
GTTATTTACG ATCGCAGTAT GTCGGTAGAG CTAGAGCATC GCCAATTTAT AGAAAAACAG
CTGCAACAAG CTATAAAAGA GCCAGAGCAA TTTGGCTTGC TGTACCAACC GCAATTTAAT
GCGCGCGGCG ACTGCATAGG CGCAGAAGCA CTGGTTCGCT GGAATGGCCA GAACCTTTCA
CCGGAAGAGT TTATTCCCGT AGCCGAAGAT ACCGGTCTTA TGCTGGAGCT GGGGCACCAG
ATACTCTCGC GCGCATGTCA CGACCTAAAA CAACTACAAG ACGAATCGGC AACCGGCCAC
GTTAAACGCA TCTCTGTAAA CGTTAGTGCC TTGCAATTTA ATCAGCGCAA TTTTATTAGT
GAGCTCACCT CAATTATTAG TAATGCCGAA GCGAATTCAC ATCTAATTGG CATAGAAATA
ACCGAGAGCG CGCTGGTAAA AAATACCGAT GAGGCCATTA AGAAAATAGC CGCTCTCAGC
GAGATGGGAA TAAGAGTTTC TATCGACGAT TTCGGCACTG GCTACTCATC GCTAGCCTAC
CTAAACCGGC TGCCGGTAAA CGCACTTAAA ATTGACCAAA CCTTTGTAAA AGGCATCGCC
AAAGATGCAA ATAACCTCGC CATAGTAGAA ACCATTATGG CTCTGGGCCA CAGTATTGGG
CTGTCGGTAA TGGCTGAAGG CGTAGAGAAC GACGCAGATC TGCAATGTTT GAAACGCCTT
GGCTGTGAGC TCTACCAAGG TTTCTACTTT GGCAAACCCA TGCCACTGGC CATGGCCAAG
CACTCGCTAC TGCCTAACTA TTCAACGGCT GACGAACCCG CTAACCCATA G
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| Protein sequence | MENTLKYISI QHELGMSIGL ELPLQPMLRR FTKVAVRRLN LAEVRLYFLH DRQGQLALPS
DIKSSVLKPY FSSTLSETVA TPAALSDTFE RLIGFPTDYI LQHDDTTGEY TYYYNLTNIG
MISLHLYHQP IHAELLELLK PIVERLAISC QASIEHHHLL QAIDDRKRAE EVVRFQLLHD
ELTQLPNRRS FMRHLDELNS TYNARKLKAA VLFIDFDRFK TVNDTLGHAV GDSLLQAIAK
TFIKLVRSHE MVARLSGDEF VIVLSETEQQ NQSVYQIVEN TLSNIQLAFS NPLQAGEHLL
HITPSIGVEF FPNKNYTSEQ ILRHADTAMY VAKSQAPNSA VIYDRSMSVE LEHRQFIEKQ
LQQAIKEPEQ FGLLYQPQFN ARGDCIGAEA LVRWNGQNLS PEEFIPVAED TGLMLELGHQ
ILSRACHDLK QLQDESATGH VKRISVNVSA LQFNQRNFIS ELTSIISNAE ANSHLIGIEI
TESALVKNTD EAIKKIAALS EMGIRVSIDD FGTGYSSLAY LNRLPVNALK IDQTFVKGIA
KDANNLAIVE TIMALGHSIG LSVMAEGVEN DADLQCLKRL GCELYQGFYF GKPMPLAMAK
HSLLPNYSTA DEPANP
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