| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2909 |
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| Symbol | |
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| ID | 3968038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3688214 |
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| End bp | 3689245 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922006 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_528378 |
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| Protein GI | 90022551 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.313507 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGT TAGGCGGCGC TTGGTTGAAG TTTGCGCGTT TTAAAAGCAA CCAATTTATT
CTGGCGGTAC TTGCTAGTAG TTGTTGCAGT ATGGTGAGTG CAAATAGCGA TACAGGCACG
AATGAGCCCT CTGATAGGGG CGCATTTGCC GCTGCGGCTA AAGGCGGGCT GCGCGCGCCG
GCAATGGCTA GAATAGCTCA ACAAGGCAGC GTGCGAGTAG CAATGAAAAG CTTGCATAAT
GCCACAGCAA ATTCTGCTGG TGTAATCGGG GTGGCACCTT TTTTAGTGAA ATCTCACGGC
GACCAATGTT CGGTATGTAA CGCCGGCAGC GCCGCCAAAA TCTACGATGG AAAAGTATGT
GGTTTCGATG TTGAAGTGGC TTACCTGCTC GCCGAAAAAC TGGATACGAA CCTCATTATC
GATTTATCGC AACATAAATA TGACCATGTT GTCGACTTGA TCAGCTGGGG GGACGCAGAT
CTAGCTGTCT CTACATTAAG TAGTACTCTG CGTCGTGCGC AATACGTAGC GTTTAGTGAC
CCATATTTAG AGTTGAGCCA AACTCTATTA GTAAACCGCT TGGCGATGGA AAAGTTAGAT
TTAACGCAGG CTGCGATTGT CGCAGGCATG CCTCGCATTA AGTCGAATAA AAAAAGTGTT
CCAGCCCTTA CTATTGCTGT AGAGGGTGGT TCTTCGTATG CAGAGTTTGC TGACGATTTA
TTCAAAGGCC ACAACATTCG CCGCTATGAT GATTTACTTG TTGCTATGGA TGCGTTAATC
AAAGGCGACG AGGTGTTTGC CATATATGCC GATAACATGC AAATAATACA GTTGTTAAAC
GACAATAAAA AAGCAGGGCT GTTTCTAAAA ATGGTAAACC TTCAACGCCC AGATAACATA
AGCATAGCCA CCAATTACAA TGACTCTTCG CTATTGAATT GGGTAAACCT ATTTTTACGA
GAAATTAAAA TGGATGGCGA GTTAACTGCG CTTAAACAAA AGTGTGGGTT AAGCGGAGGT
TTATATGAAT AA
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| Protein sequence | MNMLGGAWLK FARFKSNQFI LAVLASSCCS MVSANSDTGT NEPSDRGAFA AAAKGGLRAP
AMARIAQQGS VRVAMKSLHN ATANSAGVIG VAPFLVKSHG DQCSVCNAGS AAKIYDGKVC
GFDVEVAYLL AEKLDTNLII DLSQHKYDHV VDLISWGDAD LAVSTLSSTL RRAQYVAFSD
PYLELSQTLL VNRLAMEKLD LTQAAIVAGM PRIKSNKKSV PALTIAVEGG SSYAEFADDL
FKGHNIRRYD DLLVAMDALI KGDEVFAIYA DNMQIIQLLN DNKKAGLFLK MVNLQRPDNI
SIATNYNDSS LLNWVNLFLR EIKMDGELTA LKQKCGLSGG LYE
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