| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2894 |
|---|
| Symbol | |
|---|
| ID | 3968062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3668186 |
|---|
| End bp | 3671275 |
|---|
| Gene Length | 3090 bp |
|---|
| Protein Length | 1029 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637921991 |
|---|
| Product | cellulose binding, type IV |
|---|
| Protein accession | YP_528363 |
|---|
| Protein GI | 90022536 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0297101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTTA CCTGCCGATA CATTTATCGA CTAACTGCCG CACTGCTGCT TTGCAGTAGC
TGTGCACTTG CCGCCAACAC TCCCCAAACG CAAAACGCCA CACCCGAAGC GCCCGGAAGC
CAAATAAGCA CAGCAGAGCA AGTTGCGACA ATTGAAGAAT TTTACGCAAA GCGACTTGTT
GGCCTTGAGC CCATTCGCGC TATTTTCCCT GCTGCATGGC TAACCGAAAC ACCTGCTTGG
AATGAAGAAA AAAATAAACT GCAACAGCAT CTAGCCGCAT TATCACAAGC AGACACCACA
AATACCTCCC CACACGAGCT GGAACTGACG CAGCTAAAAT TGATGTGGGT GCTATTTACA
CCCGCAGAGC GCAGCGATTT GATCAATTCA GCCAAAACCC AGCTGCTTGC TCAAACCAAC
AAACAAAATG CGCAAAAAAT ACTTGAACAA ACCCAAGCGG CAGCCAGCGA GCACGAAAAG
CAACTGCAGC AGGTTAAACA CGAACTGGCC CAAAGTGAGG ACGACAGAGA AAAGCGCTTG
CTGGCTATAC AATTAGGTAT CGAAAAGCGC ATTGAGTTAA TAACGGCCAA AACCAAACTG
ATCGCCGATG CGCAAATAGC ATTTAGCCAA GATGTAAGCG ATTGGAAAGA AATTCAATCT
CTCATCAGCA ATGCGCTCGA TGACGAGCAC TTCATCCCCG GCACCCGAGA TTTCACCCTG
TATCGCAAAA CCCTGCGCGA CCGACTTGCG GCCTCTAACC GCGCCGTAGC CAACAAACAT
GTATTTGTTA CTACGTACTT TCGCGACGAC ATGAACCTGC CAGAAGAGGA GCAAAGCTTT
AATGTGCAGG TAAGAGAAAC AGACAGTGAT AAAAACGTCG AGCGAGTCAA TACTGTACTT
AGAAAGCGTC TTGAACTCAG TCAAAGTGAA GAGAATTTTA TCGCTAAAAA GCAAACGCTA
ATCGTAGACC TCGCGGTTTG GCACAAACAA TATCGCACCG ATCTATTACT TCTGCGTGGC
AAACTAATCA AGCAAGTTAT CGACAATAAC GCTTTTTCGC TTAACAACTT CGACCCAATT
GCAGTCGAGT TACGCACGCT TTACGCCTCC ACGCTTTTCT CTAAATGGAG CAAAGCTTAC
GTTAAAACCT ATGGCACAAG TAAAAAAACA TCGTTAACGT TTTCTAATAT TACCCATCTG
CTAAAAGTAC TGCTTACCAC GTGTTTTATT GTGTGGTTAT TTCTAAAACG GCAGCTGGTG
CTGGATAGCG CCAAACGCTG GTGCCTTACC CGCACTAGTA ACGCGCGTTG GCGTAAAGCC
ACCGCACTTT TGTTTGGTGC ACTACAAGAA TTGTATATAT TTATAATTTT GTTTTTCTTT
GGGGGTAGCG TAATAAAAAT ACTGGTAAGC GTAGGCATTA GCTCTGCCGA AATGTTCAAA
CCGGTACTAA ATAAAATTGT ATTGTTCTTT CTACTACTTG GGCTTATTCA ATATGTACAA
CCTTTTTTAA GCCAGCGCGA ACAGCGCAAG GGTAGAGATA CACATGAAAT AGCCGCCATT
GAAGAGGTTT TTTCTTTAGT GCCTCAAGTT TACCTTTACT ACTGGTTGGC TGCGGGCGTT
GTGGCAAGCT TAATATCTCA ACACTTAAAT GAAAGCTTAC TGGGCTTTCA CGCAGTCAAT
GTTATCACCT TCGCATTTGC GATAGCCTTG CTTGTTATTA TATGGGTGCG CCGTCACACT
TGGCGAACCA TAAACGAAAA AGCCTATAAT TCGGAGTTGT GGCAGAAAAT TAGCTTCAAT
GCACGTCGTA AACCCTGGGA ACCTCTAATT CTGCTTATTG GCGGCGGCAT GGGAGTTTAC
CGTGTTGTTT GGTCCGTTTT GTTAGACAGG CTAACAGAGC TAGAGCTCAC CCGCAGCTTT
CAGGCTATGG TAAGCCGTGC GATATTAGAA AGGCAGTACC GCAAAACCAC CACAAAACTC
TATGCAGAAC GCTTCCCCGA TAAATATTGG CGAAACTTCC ATTTTCAAAC CCCAGCAGAA
GCCCACTGGT ACGTTGAGCG CTCGGAACAC CAAGAGGTTA TTCAGGCAGC CTATGAGAAC
TGGCAGAGTA AAGGCAAAGC AACACGTTTA CTGATTTGTG GCGACCGAGG TATTGGTAAA
TCTGAGTTAA TCTCCAACTT CTTACGTAAT GAAGAAATAA AGTGCTTGCA CACACATATA
GACACAGGTG AAACATCCGT AGCTGCGGTA TGCCAGCGAT TATCGCTGTC GTTTTTACAA
TCGCGTATGG ATACACCCGA AGATATTATC AATGCGCTAA AACTGATGGA ACCACAGGTA
TTGTGCGTAG AAAATATTGA AAACACTATT TTGCGCAAAG TGGGTGGCTT TGCCGCCTAT
ACGGCCGTAA TTGATATTAT TTTACAAACA TCTGACAAAC ACTTTTGGCT GGTAACCTGC
ACAAGCTACG CATGGACAAT AGTACAGCAC GGCGTAATTG GTGCAGACTG CTTTACCGAA
AACATAATGG TAGAAGGCTT AAGTGAAGAA GCATTAAAAA CTGCCATGCT AGCAAGGCAT
AACGATGCAC ACCCTGCTAC CCCGGACTTT AGCCAGCTAA ATTTTAGCAA TCCCAAACAG
GGGCGGCTTC GCGATAAACT GCAACAGCAA GATGCAAGTG AAAAAGGCGA AGAGCTGTAT
TTTCGAATAC TGTGGGACTA CACCAAAGGT AACCCAAGGC AAGCACTGTA TTACTGGAAG
GCCTCTCTCG CATGGGACGG ATTAAAATGC ACGGTACGAT TATTTGAAAT ACCCGAACAC
AGGGTGCTCG AAACCCTACA AGATAGAGCA CTTATGCTAC TTGCCGGTTT AATAGAACAT
AACGGCTTAA CCTTAAGAGG CATGCAAGAA ATAATGAATT GCCCAGAAGC CACGGTGCGC
AGACACATTG AAGAGCTAAC ACCTTACGGT ATTGTATTTA GCATAGAAAA CGACGACTCC
TGTGGCTGGC ACGTGGAAAG CTTTTGGACC CGTGCAGTAG AAAATTATCT AGAAAAAAGA
CAATTGCTTT TTAAAGGAGC AGCACTATGA
|
|---|
| Protein sequence | MTVTCRYIYR LTAALLLCSS CALAANTPQT QNATPEAPGS QISTAEQVAT IEEFYAKRLV
GLEPIRAIFP AAWLTETPAW NEEKNKLQQH LAALSQADTT NTSPHELELT QLKLMWVLFT
PAERSDLINS AKTQLLAQTN KQNAQKILEQ TQAAASEHEK QLQQVKHELA QSEDDREKRL
LAIQLGIEKR IELITAKTKL IADAQIAFSQ DVSDWKEIQS LISNALDDEH FIPGTRDFTL
YRKTLRDRLA ASNRAVANKH VFVTTYFRDD MNLPEEEQSF NVQVRETDSD KNVERVNTVL
RKRLELSQSE ENFIAKKQTL IVDLAVWHKQ YRTDLLLLRG KLIKQVIDNN AFSLNNFDPI
AVELRTLYAS TLFSKWSKAY VKTYGTSKKT SLTFSNITHL LKVLLTTCFI VWLFLKRQLV
LDSAKRWCLT RTSNARWRKA TALLFGALQE LYIFIILFFF GGSVIKILVS VGISSAEMFK
PVLNKIVLFF LLLGLIQYVQ PFLSQREQRK GRDTHEIAAI EEVFSLVPQV YLYYWLAAGV
VASLISQHLN ESLLGFHAVN VITFAFAIAL LVIIWVRRHT WRTINEKAYN SELWQKISFN
ARRKPWEPLI LLIGGGMGVY RVVWSVLLDR LTELELTRSF QAMVSRAILE RQYRKTTTKL
YAERFPDKYW RNFHFQTPAE AHWYVERSEH QEVIQAAYEN WQSKGKATRL LICGDRGIGK
SELISNFLRN EEIKCLHTHI DTGETSVAAV CQRLSLSFLQ SRMDTPEDII NALKLMEPQV
LCVENIENTI LRKVGGFAAY TAVIDIILQT SDKHFWLVTC TSYAWTIVQH GVIGADCFTE
NIMVEGLSEE ALKTAMLARH NDAHPATPDF SQLNFSNPKQ GRLRDKLQQQ DASEKGEELY
FRILWDYTKG NPRQALYYWK ASLAWDGLKC TVRLFEIPEH RVLETLQDRA LMLLAGLIEH
NGLTLRGMQE IMNCPEATVR RHIEELTPYG IVFSIENDDS CGWHVESFWT RAVENYLEKR
QLLFKGAAL
|
|---|
| |