| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2673 |
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| Symbol | |
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| ID | 3968492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3389953 |
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| End bp | 3391062 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637921771 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_528145 |
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| Protein GI | 90022318 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1600] Uncharacterized Fe-S protein |
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| TIGRFAM ID | [TIGR00276] iron-sulfur cluster binding protein, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCAGC CACTCCATAC ACTCGCGCAG CTGATAAAAG AGTGGAGTCG TGAACTTGGC
TTCCAGCAGG CAGGCATTAC CGATACGGAC CTATCTAATC AAGAAGATCG TTTTCGTGCG
TGGCTCGCAG CGGGGTATCA GGGTTCGATG GAATGGATGG CGGAGCACGC CGATTTGCGT
TTAGACCCAG AAAAACTGCA CCCGGGTGCC TGTCGAATTA TATCGGTGCG CTTAGATTAC
CTGCCCCCCG ATACCAACCA AATTAAAATT CTTAAATCTG CAGATACTGC GTACGTATCG
CGCTATGCAC TGGGCCGCGA CTACCACAAG CTTATTCGCA AGCGCCTCGC AACTCTGGCA
AAAAAAATTG AAGCGTGGGC GGTCGAAAAC CAAATAGATG TACCTCTAAG CCAGCGCCCA
TTTGTAGATA GCGCCCCAGT AATGGAGCGA CCACTCGCAG AAAAAGCCGG CCTAGGTTGG
ACAGGCAAGC ACACTCTTAT CATTAACCGT CACGCGGGCA GCTACTTCTT CTTGGGGGAG
CTATTTACCA ACCTGCCTCT ACCCGTGGAA ACACAAACCG CAGAAAATCT GTGTGGCGAC
TGCACAGCAT GCTTAAAGGT ATGCCCAACA GATGCCTTTC CAACCCCTTA CACGCTCGAC
GCTAAACGCT GTATTTCTTA CCTTACCATT GAGAACAAAG GCCCCATTCC AGAAGAGTTT
CGCGAGCCCA TAGGCAACCG AGTATTTGGC TGTGACGACT GCCAAGCCAT TTGCCCGTGG
AATAAATACG CCACCCCCAC GGACGAGAAA GACTTTCACC CGCGCCACGG GCTAGAAGCG
GCGAAACTTA ACACGCTGTT TAGCTGGGAC GAGGCAACCT TTCTAAAAAA TACTGAAGGC
TCGGCCATTC GTAGAATTGG CTTTGAAAAA TGGCAACGCA ATTTAGCGGT AGGCATAGGC
AACGGCCCTA GCTCTCCCGA AACCATTGAT ATACTTAAAC AAAAGCTTCA CACCAGCACC
CCGCTTGTAG CCGAGCATAT CCACTGGGCG ATAAAGCAAC TGCAAAACCC AGATCGCAAA
CGCAAGCGCA AAATCAAAGC ACAAGCTTAG
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| Protein sequence | MNQPLHTLAQ LIKEWSRELG FQQAGITDTD LSNQEDRFRA WLAAGYQGSM EWMAEHADLR
LDPEKLHPGA CRIISVRLDY LPPDTNQIKI LKSADTAYVS RYALGRDYHK LIRKRLATLA
KKIEAWAVEN QIDVPLSQRP FVDSAPVMER PLAEKAGLGW TGKHTLIINR HAGSYFFLGE
LFTNLPLPVE TQTAENLCGD CTACLKVCPT DAFPTPYTLD AKRCISYLTI ENKGPIPEEF
REPIGNRVFG CDDCQAICPW NKYATPTDEK DFHPRHGLEA AKLNTLFSWD EATFLKNTEG
SAIRRIGFEK WQRNLAVGIG NGPSSPETID ILKQKLHTST PLVAEHIHWA IKQLQNPDRK
RKRKIKAQA
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