Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2558 |
Symbol | |
ID | 3968724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3244539 |
End bp | 3249683 |
Gene Length | 5145 bp |
Protein Length | 1714 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637921656 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_528030 |
Protein GI | 90022203 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.156102 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATCG TGAAAAGAAA TCGAATCATT AAGTTTGTAA ATTTAATAAG TAAAGCGATG TTGGCGATAA CGGCGTCTAT TGCTATAAAT GCTAATGCGC AATTGCAAAC AGTCGCAGAT TTCGATGCGA TCCCTCCTAC CGTTGTAGAC TCAACTACGC CGCTTGTAAT GCTTGTAATG TCGCGAGATA ACCAGCTCTG GCACAAAGCC TATACGGATT ATACCGATCT TGATGGCGAC GGCACTATAG ATACTACCTA TAACGATCGA TTCGAGTACT ACGGCTATTT TCGTTCAGAT CTTTGCTATA CATACGCCAA CGGCATGTTC TCGCCTGCTG CCGAAGTCGC TGAAAACTCG CACAAGTGTA GCGGTCAGTG GTCTGGTAAC TTTATGAACT GGCTGACCAC AACGCGTATA GATGTTGTGC GTAAAGTGCT CTACGGTGGT TATCGCTCTA CGGATACAGC CACGTCTACT GTTTTACAGC GTGCGTTTAT TCCTGCTGAC AACCATGCAT TTGTTAAAGT GGTTGATGCT TCAAAAATTG ACGGGGTTAT AGCGGATTAT ACGCCTATTA CAGGGTTGTC AGTTGTTAGT TTTTGTAATG TTACTGATTA CGATGTGGGG GCAAGCGATA TATCTGGCGA TATGTCAGCA ATTGATAACC CTCCAAAGCT AAAAATGGCT GAAGGAGATC AAAAAGCATG GTCTGGAAGT GAGCGTAATC AATGCCAATA TTCTGGATCT GGTGGTGAAG GAGGGCGGTC TCAATTCTCA CCTGGGAGGC CTACTGATTC AGCTATTACA AGTATAGCGT CAGATGGTGA GTTAATTGTT CGCGTTGAAA CTTGTTCCAC TGCATTGGAC TCGCCAGATG CTAAGAGCTG TAAAGAATAT GAAGACGATT CGGGTAATAT CGTTCGTAAA CCATATGGCA TTTTACAAAG CTATGGAGAA ACCGGAGAGT TTAGATTCGG TTTGATGACC GGTAGTTATG AGAAAAAAGA CCGCGGTGGA GTACTTAGGA AAAATATTGC GCTCATGGGC GGAGTTGATG CTGCAGCCGC AGATTTAGAA ATAGATTTGG AAACAGGAGT GTTCCTGACG AAAGGCTCTG GTGACCCAGG AATTATTAAT ACAATCAATC GCCTTCGTAT ACAGGGATGG GACTATGGTG ACACACATTA TGATGATTGT GATACATACG GCCTTTCAAT TAACAATTTC CTCTCTACTA CTGCTTCGAA TAATAGAAAG TGTAAAGACT GGGGAAATCC GATTTCGGAG CTCTATGTAG AAGCCCTTAG GTATTTTGCT GGTGGTTCCG CTAATTCTGC CTATGTTACT GATGATGGTT TTATTCCAAC GGCGGCTTGG ACAGATCCAT TTAGTGCTGA CGCTCCTTGC TCCAAATGTT CCATTATTGT GCTTTCGACG GGCTTGAATA ACTTTGATGG TGACTTGTAT ACGAACGCGC TCCCTAATTT GACATCAATT GAAAATGAAA CGGATTTAGT TGGTATAGCG GAAGGTTTGA ATATAGGGCA ATACGTGGTT GGTAATGCAA CTGGTGGCAC CGCAGATGAA TGTGACGCTA AATCAATACC TAGTCTAAGT GCTGCGAGTG GTCCGTGTCC AGAGGTGCCC CGTTTGCAGG GTACCTATAA AATAGCAGGT GCTTCCTATT ACGCAAAGAA AACTGATTTA CGAACCTCGT TGATCGGTGA ACAAACTGTT AATACCTATG CTGTTTCACT ATCTGAGACG ATGCCAAGCT TCGATATAAC AACAAGCTCT GGAGAAAGTG TTAAGTTTGT ACCAACTTGT CAAGCGCATA GTAATGGTAG AAGGAGGGTA ACGGATAGTG GGTGGACTGC ATGTAGCTTG GTTGATCTAA CTGTAGTGGA TAAGCATGAT TTTGGGGGGG CACTTCTAAT ATCTTGGGAA GATTCGATGT GGGGTAATGA CTATGATATG GATGGTTATA TCTATTTTGA ATATTGTACC AAAACTGGTA CCGCAAGCCA GGTTCGAACT GCATGTCCAA AAGGATTAAA TGAAGATGCA CAAGATGAGT TTGGGAACAA TACAAGCCCA AGTGCCGTAA TTAATCATTC CAGCGGTGAC TTCACAAACA CCCATATTTC ACATGTTGTG CCGGAGTGGG ATGAAGCTGC GACGGGTGAA ATTCAAATCC GATTTGCATT GGTGGCTTCC GCGGGGGGGA ACTCGTTGAA GTTTGGTTAT GTTCTTTTGG GGAGTGATGA TGATGGGGCG CACGTCAATG AACTTCTCAA AGAAGGTAAT GACAATATTG TATCCACTGC TATTTTTGAT GGGCCAGACT CGAATCGAAC CATTTGGAGT CGAGATGCTA AAAAGGTAAG AGCTACCCCA GGAACACCTT CTACACTGGA GAACCCCCTT TGGTATGCTG CAAAATATGG GAACTTTACA GACTTTAATA ATTCAAGTAC GCCTGACTTA ACCGGTGAGT GGGATGTTCT TAATGTCGAT GGAACCGTGG GTTCTGATGG GATTCCCGAT GGATATTTTC CAGTGTCAAA TCCAGCAAAT TTACCTACAG CAATTAAGCG TATTTTCGAT AATTTAAGCG AGCGCGTTTC TGCCGGTAGC GCAGCGGCAG TGAATGCTCA AACAGGTAGC GGTGAGGGGG CTGTTTACCA AGCCCTTTAT GCTCCTACAG TTGAGGGAAG TAATGGTGAG GTTAGTTGGG TTGGTTCTAT ACATTCTTTG TTTATTGACG ATCAGGGTAG AATCAGAGAG GACTCCGCAG CCCCCAAAGC ACAGCTCACC GATGCTGATA ATGTATTATC TTTTTACTTT GACGATGTGG AGGATGAAAC AAAAATTCAA CGTTATACCG TGGGTGGTGT AGCAGTAGGA GACCCAATAA CCTTCACCGA TAGTTCATTT AGCCCCATTT GGTCGGCGAG GGAGCAGTTG GGTGCGGTAA CCGATTATAT TAGTAACCGA ACTTATACAT CTAACGCTAG TGACGGGCGC TATATATTTA CAAGCTTCGA CCGAGATGGC GATGGCAATG TAATAAGCCC GGAGTATGAA ACAACAAACT CTGGACCAGG TGTAACAGAC AAAGCCCACG CATTCGTTGC CTCTAACTTT GCTTTATCTG GCAGTACCGC TACCGATCAC GGTTATTTAG GTTTAGCTAG TGGCGTAACT GAAGCGTCAG TTGAAAATTT AATAAACTTT ATTCGCGGCC AAGAAGGGTT GCCCAATTCC AGGTCTCGCT CCATTTATGA TGGTGATGGC AATGCAACTA AATATTTAAT TGGCGACATT GTGCACTCTA CTCCTGCAAT TGTAGCGAAA CCTGCGGCAG GCTACCATTT GACTTATAGG GATAGAACCT ATAGGGAATT TGCCGAGCAC TATCGCGCTA GGCGCAATGT TATTTATGTA GGGGCGAACG ATGGAATGCT ACATGCATTT AATGCTGGCT TTTTTAATTC TACAAATACA TCGTTTAGTT TAACTGACGC TTCAGGTCGT GCCACTCCTC ACCCATTGGG CAGTGAGCTT TGGGGCTATG TGCCTTTTAA TTTATTGCCT CATTTACAGT GGTTGAAATC TGAGCTATAC CCCCATGTGT ATTATATGGA TGGTATTGTA AAAACTTTTG ATGTAAATAT TTTTGAAGAC GATACTGATC ACCCTGATGG TTGGGGCACA ATAGTTGTTG CCGGTATGCG TTTTGGTGGC GGTGAATTTT ATGTAGATCA CGATGCCGAT GAAGGTGAAA CCAACCCAAC AGATAGAATA GCTATGCGTT CTGGTTACGT GATTTTAGAT GTTACAAACC CGGAAGTTGC ACCAAAACTT ATAGCTGAAA TCACGCACCC AGATTTAGGC TACAGTGTTT CAGAGCCTGC GCTTATAAAG TACAGAATGC CAAATCCTGA TACAGGTTCT TACGAGGGTA CCTCTCGAAA TCGTTGGTAC ATTGTATTTG GTTCTGGGCC AGCCGGTGAC ACCGATGCAG AAAGGCAAGC AGCCCTTGAT GAAGCGGTGA GTAGTAAGAG CGCTAAATTA TTTGTTTTTG ATCTTAACAA TAAATCTCTT TCTATGAGTG AGTTGACCGA TAACAATGGC GACCCTGAAT TGGCCAGTTT TGTGGGCGGT GTAGAGTCGG TAGATTGGAC TTCAGATTTT GTTGACGACG CTATTTATTT CGGGCTGGTT TCGGGTGACG CTGCAACGCC AGGGGGCAAA CTCAAGCGTG GTAAATTAAG CTTTTCTGAA AGTGGTGATT TGAATATCGA TTTCTCTCGT GATTTGTTTA ATGGCACTAG CTTGGCGTTC AGCGCGTCGC CTCTGGCATT TAGGGATGTA AACAATGACT ACTGGGTTTT TGCTGGGACT GGTAGGTATT ATGTCGCAGC AGATAACTTA TCTACTCAGC AGCAGTCGTT TTTTGGTATT AAAGAACCGA AGGCTTCTGG TATAGCTGCT TTGAATACAA CTGTGGCAAA TGCCAGTTTG GTAGATACGT CGACTGTAGA TGTATATACC GATGGGAGAG TCTTTGACGA AGGTGCCGCT GTTACCCTAA CGGCTAATGG TGCCACGCTG GTGCCGGAAA CCTTTGAAGA TGTTCAGGAG TTTATCGGAG CCCACGGAGG GTGGCGGTTT GACTTGTACT ATCCTGTTTG GGATATTATT GCGCCGCGTA TGAGGGTTAC AACAAAGGCT GCTATGGCTG GTAACTCTGT TATTTTCACC GCCTATGATG CGACCGGCGA GTATTGTGAT TCCGAAGGGA ATGGTTATTT ATTTGCGCCT TATAGCAATG GCGGTGCTCC TGGCCCCTTT GCCCCAGTTG GGACTGATAG TAGCGATACC ATTAGCGCTG CAGTAAGTGG CGACCCGAAT GAAGAGCGCG TACTCTGGGG TGTGCCATTG GGTATTGGTG TTCCTTCTAG CCCAATTGTG ACCAGACCAA GTGCGGATTC TGATAGTGGT GATTCGGGGT GTGATGAGTA TATGGCGCTA GTACAAAAGT CGACTGGTGA AATTGTTAAT GAAATGCTTG GCTGTGAATC TTACACTTCT GGTCGTCAAA GCTGGCGTGA AATCCCTGTA ACATGGGAAA TGTAA
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Protein sequence | MQIVKRNRII KFVNLISKAM LAITASIAIN ANAQLQTVAD FDAIPPTVVD STTPLVMLVM SRDNQLWHKA YTDYTDLDGD GTIDTTYNDR FEYYGYFRSD LCYTYANGMF SPAAEVAENS HKCSGQWSGN FMNWLTTTRI DVVRKVLYGG YRSTDTATST VLQRAFIPAD NHAFVKVVDA SKIDGVIADY TPITGLSVVS FCNVTDYDVG ASDISGDMSA IDNPPKLKMA EGDQKAWSGS ERNQCQYSGS GGEGGRSQFS PGRPTDSAIT SIASDGELIV RVETCSTALD SPDAKSCKEY EDDSGNIVRK PYGILQSYGE TGEFRFGLMT GSYEKKDRGG VLRKNIALMG GVDAAAADLE IDLETGVFLT KGSGDPGIIN TINRLRIQGW DYGDTHYDDC DTYGLSINNF LSTTASNNRK CKDWGNPISE LYVEALRYFA GGSANSAYVT DDGFIPTAAW TDPFSADAPC SKCSIIVLST GLNNFDGDLY TNALPNLTSI ENETDLVGIA EGLNIGQYVV GNATGGTADE CDAKSIPSLS AASGPCPEVP RLQGTYKIAG ASYYAKKTDL RTSLIGEQTV NTYAVSLSET MPSFDITTSS GESVKFVPTC QAHSNGRRRV TDSGWTACSL VDLTVVDKHD FGGALLISWE DSMWGNDYDM DGYIYFEYCT KTGTASQVRT ACPKGLNEDA QDEFGNNTSP SAVINHSSGD FTNTHISHVV PEWDEAATGE IQIRFALVAS AGGNSLKFGY VLLGSDDDGA HVNELLKEGN DNIVSTAIFD GPDSNRTIWS RDAKKVRATP GTPSTLENPL WYAAKYGNFT DFNNSSTPDL TGEWDVLNVD GTVGSDGIPD GYFPVSNPAN LPTAIKRIFD NLSERVSAGS AAAVNAQTGS GEGAVYQALY APTVEGSNGE VSWVGSIHSL FIDDQGRIRE DSAAPKAQLT DADNVLSFYF DDVEDETKIQ RYTVGGVAVG DPITFTDSSF SPIWSAREQL GAVTDYISNR TYTSNASDGR YIFTSFDRDG DGNVISPEYE TTNSGPGVTD KAHAFVASNF ALSGSTATDH GYLGLASGVT EASVENLINF IRGQEGLPNS RSRSIYDGDG NATKYLIGDI VHSTPAIVAK PAAGYHLTYR DRTYREFAEH YRARRNVIYV GANDGMLHAF NAGFFNSTNT SFSLTDASGR ATPHPLGSEL WGYVPFNLLP HLQWLKSELY PHVYYMDGIV KTFDVNIFED DTDHPDGWGT IVVAGMRFGG GEFYVDHDAD EGETNPTDRI AMRSGYVILD VTNPEVAPKL IAEITHPDLG YSVSEPALIK YRMPNPDTGS YEGTSRNRWY IVFGSGPAGD TDAERQAALD EAVSSKSAKL FVFDLNNKSL SMSELTDNNG DPELASFVGG VESVDWTSDF VDDAIYFGLV SGDAATPGGK LKRGKLSFSE SGDLNIDFSR DLFNGTSLAF SASPLAFRDV NNDYWVFAGT GRYYVAADNL STQQQSFFGI KEPKASGIAA LNTTVANASL VDTSTVDVYT DGRVFDEGAA VTLTANGATL VPETFEDVQE FIGAHGGWRF DLYYPVWDII APRMRVTTKA AMAGNSVIFT AYDATGEYCD SEGNGYLFAP YSNGGAPGPF APVGTDSSDT ISAAVSGDPN EERVLWGVPL GIGVPSSPIV TRPSADSDSG DSGCDEYMAL VQKSTGEIVN EMLGCESYTS GRQSWREIPV TWEM
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