| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2530 |
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| Symbol | |
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| ID | 3968757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3202672 |
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| End bp | 3203433 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921623 |
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| Product | LytB protein |
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| Protein accession | YP_528002 |
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| Protein GI | 90022175 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain
[TIGR02794] TolA protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0000152154 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.947452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATTC TTCGCAATAT TGCCATACCC TGTGGAGCCA CCTTGGCGAT CCATGTGGTG
GTGATTGCGG CGTTATTTTC TGACTGGCAG CCTAAAATAG AGCACAAGCT CGTAAAGCCG
CCGCGCCACA TAGAAGCTAA ATTGGTTGAA TTAAAACCAA AGGCTAAGCA GGCAAAGCAG
GAAGAAAAGC CTAAAAAGGT AGATTTAACT AAAAAGCAGC GCATGCTAGA AGAGCAGCAA
CGCGCAGAAA AGTTAAAGCG AGAAGCCGAA GTTAAAAAGC GGCAAGAATT AGAGGCTAAA
AAAGCAGCAG AAGCTAAAAA GAAGAAAGAG CAAGCTGCTG CTGAAGCAAA AAAGAAGGAG
CGGCAACGTA AAGAAGAGCA GCAGCGACAA TTAAGAATAC AGCAGGAATT TGAGAAAGCG
TTACTTGAAG AGCAGGGGCA ATTACTAGAA GATAGCTACG CAACACAGGC TCAAAGTTAT
GCAGCACTTA TAAGGCAGCG AGTAGAGCGA AGCTGGAGTA GGCCGCCATC GGCGCGAAAC
GGAATGCGTT GTGAGTTGTC TATACAGCTG GTACCAAGTG GGCGCGTAAT TGATGTGCAG
ATTTCTCGCT CTAGTGGCGA TGCTGCATTC GATAGGGCAG CACTTAAGGC TGTGAAAAAA
ATAGAAGCGT TTCCCGAATT GCAGGATATG CCAATTGGCT TATTCGAAAG AGAATTTAGA
AACTTCAAAA TGGTGTTTCA GCCAGAGGAT TTACGACAAT GA
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| Protein sequence | MNILRNIAIP CGATLAIHVV VIAALFSDWQ PKIEHKLVKP PRHIEAKLVE LKPKAKQAKQ
EEKPKKVDLT KKQRMLEEQQ RAEKLKREAE VKKRQELEAK KAAEAKKKKE QAAAEAKKKE
RQRKEEQQRQ LRIQQEFEKA LLEEQGQLLE DSYATQAQSY AALIRQRVER SWSRPPSARN
GMRCELSIQL VPSGRVIDVQ ISRSSGDAAF DRAALKAVKK IEAFPELQDM PIGLFEREFR
NFKMVFQPED LRQ
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