| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1967 |
|---|
| Symbol | |
|---|
| ID | 3967132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2471813 |
|---|
| End bp | 2474356 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637921055 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_527439 |
|---|
| Protein GI | 90021612 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00196238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.91611 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATTA ACTTTGAAAA ACGATCACCT AACAAGGGAA CGGAAAAAAA GGTACATCCA
TGCGAAATTT ACGACACCCT GGATAGGAAT GCCAACAAAG GTCCTCTTCG CGTACCTGTC
CAAAATGCCG TTTTGGATAA TTGGTTTGTA AATTACCGAA ATCAACGCGA CGTAATATTG
AAATTACCAA CCGGAGAAGG TAAAACTCTC ATTGGGCTAT TGATACTGCA ATCGAAGATA
AACCAGAAAA AGGGATCGTG CTTGTATATT TGTCCAAACA AGTATCTAGC CGACCAGGTT
CGCATACAGG CGGATGAATT CGGTATCCAC CACTGTGCAA TAAATGAGAA TGGACTCCCG
GAAGATTTTA TCAACGGGGA AAAAATATTG ATCACGCACG CCCAAATAGT TTTTAACGGG
CGCAGCACAA ACTTCGGCAT AGGACAGGAT TCGATAGAGG TTGAAAACAT CCTTTTGGAT
GACGCACACA GCTGTATTGA AATCATAAAA ACAGCTAGTA AATTCCGAAT ACCGCGATCG
TCAGATTGCT ACCACGAGTT GTTACAGATT TTCGGTGACG CTCTAAAAAG CCAAGGGGCT
GGAACCTATG CAGATATCTG CAATGAATCT AAAAGCGCAA TACTTGCCGT GCCTTACTGG
GAATGGGAGA GCAAACAAGA TGAAGTTATT CAGATCCTTT CAAAGTACAA TAAAAGTATG
GATAAATCAG TATGGTTTGT CTGGGATTTA TTAAAGGATA ATCTTGATAA TTGCACGGCT
GTATTTTCTG GCGCGGGTAT TGAAATATCA CCAAGATTAT TACCGATGGA GATGTTCGGC
GCATTTTACA ACGCTTCTCA TCGTGTATTT ATGTCAGCAA CCATTTCAAA CGATTCATTT
TTTATTCGCG ACCTTGGATT GACCAAGGAG GTTATAGAGA TGCCATTAAC TTTTGATAAA
AAATGGTCTG GCGAAAAGAT GGTGCTGATT CCCTCACTAA TCGATGGCAG CTTAACAAGA
GAATCTCTTG TAAATTGGAT AGGTAAATGG CGGAACACAA ATTATGGTGT AGTCGCCATT
ACTCCCAGCA ACTGGCATAA GAAAATATGG GAAAGCCTTG GATCGACTGC CGTTGACGCA
AGCAATCTTT TAGAGGAAGT GGAAAAACTA AAACTAGGGC ACTTTCCAAG CCCTGTTGTT
ATGGCAGCCA AGTATGACGG TGTAGACCTT CCTGACAATA TGTGCCGTAT CTTGGTAATC
GATTCGCTAC CTATCACAGA AACTATCACC GAAAAATATA TTGAATGCTG TATCCCTAAT
AGCACCTTTA CACAAATCAA AACCGCACAA ACAATTGAGC AAGGCTTAGG GCGCGCAGTA
AGGGGCGAAA AAGACTATTG TGTCGTCTTG CTTCTTGGCA ACGATCTCGT CAAACAGATA
CGCTTCAAAG GGTCTCGGCC ATACCTCTCG CCACAAACAC GCAAACAAAT CGACATAGGG
TTAGACTTAG CAAAGTACGC AAGAGAAGAC ATGGATGAGT CGCAAAACTA TATTCAAATG
CTCATCTCTG TCATTAATCA AGGGTTGGGG CGAGATGAAT CTTGGAAACA GTTTTATATT
AGTAATATGG ATTCAATTGA CCTCGATGAT AGTCGATCTA CCGAAATCAG CGATGAGATG
CTCATCCAGG AGCGCAAGGC AGAATGTTAT CACTCAGAAG GAAAACACAC TGACGCAGCC
AACGCGATCC AAGTTTTGCT TGACAAACAC TCTGCCACGC TTTCTAAAGA AGAACGCGGA
TGGTATCTAC AAGAAATGTC TCGGTATTTA TACGCTCAAA ATCGCGTCGA AGGAATGGCG
ATGCAAGTGA ACGCACACAG GACCAATAAA CGATTATTCC TTCCCCCGGA AGGATACCAG
TTCACAAAGA TTGATCTGAA AGCGCATGAG CGGATAGAAA ATATTAAAAG CCTAATTGGT
CAGTACGACG AATTCGAGGA TTTTCTTGTT TATATGGACG ATGTGTTTTC GCGTTTAGTT
TTTGGTGTTA AATCAGAGCG ATTCGAAAGT GCTGTTGACG AATTGGGCAA GCTTCTCGGT
TTTAATACTG AGCGACCAGA CTCAAATTGG AAGTCTGGAC CTGACAATTT ATGGGCTATC
AAAAACGGTG AATATCTATT TATCGAATGT AAAAGTGAAG TGCTGCTAAC GCGTGCTGAG
ATTTTAAAAG ATGAAACGGG TCAATTTAAT AATAACATCG CTTGGTTTAA ACGATTTTAT
CCAGGCGCAA AGGTAGTTTA TTCCATCATT ATTCCAACAA AAAAAGTGAA ATCAAATACA
GGTTTCAATG AATCGGTGGT AGTGCTTAGA GAGCGCGGTT TGAAGAACCT TGTATCTAAT
GCCCGAGCGT TTGTTTTGGG ATTCAAAAAC AGTGACCTAA AGAGTTTGTC AGATAATTTT
ATTCATCAGT CTATACACCA GCACAATTTA GACGCTGACG GTCTGATTGA ATACTATTTT
GAATCAACTC TGTTAGTTAA CTAA
|
|---|
| Protein sequence | MPINFEKRSP NKGTEKKVHP CEIYDTLDRN ANKGPLRVPV QNAVLDNWFV NYRNQRDVIL
KLPTGEGKTL IGLLILQSKI NQKKGSCLYI CPNKYLADQV RIQADEFGIH HCAINENGLP
EDFINGEKIL ITHAQIVFNG RSTNFGIGQD SIEVENILLD DAHSCIEIIK TASKFRIPRS
SDCYHELLQI FGDALKSQGA GTYADICNES KSAILAVPYW EWESKQDEVI QILSKYNKSM
DKSVWFVWDL LKDNLDNCTA VFSGAGIEIS PRLLPMEMFG AFYNASHRVF MSATISNDSF
FIRDLGLTKE VIEMPLTFDK KWSGEKMVLI PSLIDGSLTR ESLVNWIGKW RNTNYGVVAI
TPSNWHKKIW ESLGSTAVDA SNLLEEVEKL KLGHFPSPVV MAAKYDGVDL PDNMCRILVI
DSLPITETIT EKYIECCIPN STFTQIKTAQ TIEQGLGRAV RGEKDYCVVL LLGNDLVKQI
RFKGSRPYLS PQTRKQIDIG LDLAKYARED MDESQNYIQM LISVINQGLG RDESWKQFYI
SNMDSIDLDD SRSTEISDEM LIQERKAECY HSEGKHTDAA NAIQVLLDKH SATLSKEERG
WYLQEMSRYL YAQNRVEGMA MQVNAHRTNK RLFLPPEGYQ FTKIDLKAHE RIENIKSLIG
QYDEFEDFLV YMDDVFSRLV FGVKSERFES AVDELGKLLG FNTERPDSNW KSGPDNLWAI
KNGEYLFIEC KSEVLLTRAE ILKDETGQFN NNIAWFKRFY PGAKVVYSII IPTKKVKSNT
GFNESVVVLR ERGLKNLVSN ARAFVLGFKN SDLKSLSDNF IHQSIHQHNL DADGLIEYYF
ESTLLVN
|
|---|
| |