| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1882 |
|---|
| Symbol | |
|---|
| ID | 3966927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2376731 |
|---|
| End bp | 2377345 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920967 |
|---|
| Product | transcriptional regulatory protein |
|---|
| Protein accession | YP_527354 |
|---|
| Protein GI | 90021527 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4764] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.622701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATT TAAGAATTAT TGTGCTATGT GTGTTGATTG CTTCGTTTTT TTTAGGGGGC
TGTACATCTA CGCCGCCTAA GCATCTGAGT AACGCGTGCA GTATTTTCGA CGAGAAAGAC
GATTGGTATA AAGATGCCAA AAAAGCGAGT AAGCGGTGGG GTATTCCTAT AGCTACTAAC
TTGGCCATCA TGCATCAAGA ATCTAAGTTT GTATCCAAGG CTAAGCCGCC GCGTACCAAG
TTCTTATGGA TATTCCCTGG GCCAAGAAAA AGCAGCGCCT ATGGTTATTC GCAGGCAAAA
GATGAAACGT GGGATTGGTA TAAGCGTGAA TCGGGTCACG GTGGCGCCGA TAGAGATGAC
TTTGATGATG CGATAGATTT TATTGCTTGG TATAACCACA TTACGGTAAA GCGCAACAAA
GTTAAGCCGA CAGACACCTA CAATTTGTAC TTGGCCTATC ACGAAGGTCA CGGTGGCTTT
TCACGCGGCA CCTATAAGAA AAAGGCGTGG CTAATGGGTG TGGCTAAAAA AGTTGATCGG
TTGGCGAGGT CCTATTCTGC GCAATTAAAC AAATGTGAAG ACAGGCTGGA TTCATCCTGG
TGGTGGCCAT TTTAA
|
|---|
| Protein sequence | MFNLRIIVLC VLIASFFLGG CTSTPPKHLS NACSIFDEKD DWYKDAKKAS KRWGIPIATN
LAIMHQESKF VSKAKPPRTK FLWIFPGPRK SSAYGYSQAK DETWDWYKRE SGHGGADRDD
FDDAIDFIAW YNHITVKRNK VKPTDTYNLY LAYHEGHGGF SRGTYKKKAW LMGVAKKVDR
LARSYSAQLN KCEDRLDSSW WWPF
|
|---|
| |