| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1800 |
|---|
| Symbol | |
|---|
| ID | 3966745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2293814 |
|---|
| End bp | 2294476 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637920883 |
|---|
| Product | Na(+)-translocating NADH-quinone reductase subunit D |
|---|
| Protein accession | YP_527272 |
|---|
| Protein GI | 90021445 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
|---|
| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.727078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTA AAGAGCTTTT ATTTAAACCC CTGTTCGACA ACAACCCGAT TGCATTACAA
ATTTTGGGTA TTTGTTCGGC ATTGGCGGTA ACAACAAGTT TGCGTGTAAC TCTTGTTATG
TGTTTGGCTT TAACTTTGGT TACAGCATTC TCTAACTTTT TCGTTGCGGT TATTCGTAAC
CATATACCAA ACAGCATTCG TATCATTGTG CAAATGACGG TAATTGCATC TTTGGTAATT
GTTGTAGATC AGGTGATTCA AGCGTTTGCT TACGATATAT CTAAGCAGCT TTCTGTGTTT
GTTGGTTTGA TAATTACCAA CTGTATCGTT ATGGGACGCG CGGAAGCGTT TGCGATGAAA
AACCCTCCAA TCCCGAGCTT TTTTGATGGT GTTGGTAATG GTTTAGGCTA CAGCGTTTTG
TTAATTACCG TAGCCATTAT TCGTGAACTT TTTGGTGCTG GTTCTATTTT GGGCATTCAG
TTGCTTGAAC TAACCACCAA TGGTGGCTGG TATGTGGCTA ACGGCTTAAT GCTACTTTCG
CCAAGCGCAT TCTTTATTAT CGGTTTGTTG ATCTGGGCAT TACGCGGCTG GAAGAAAGGC
CAAGTGGAGC CTGCAGAATA CAAAATCGCC CCTAACACTG TTGCAACGGC GGAGACTGCA
TAA
|
|---|
| Protein sequence | MKIKELLFKP LFDNNPIALQ ILGICSALAV TTSLRVTLVM CLALTLVTAF SNFFVAVIRN
HIPNSIRIIV QMTVIASLVI VVDQVIQAFA YDISKQLSVF VGLIITNCIV MGRAEAFAMK
NPPIPSFFDG VGNGLGYSVL LITVAIIREL FGAGSILGIQ LLELTTNGGW YVANGLMLLS
PSAFFIIGLL IWALRGWKKG QVEPAEYKIA PNTVATAETA
|
|---|
| |