| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1379 |
|---|
| Symbol | |
|---|
| ID | 3965859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1782369 |
|---|
| End bp | 1783376 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920455 |
|---|
| Product | glyceraldehyde-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_526853 |
|---|
| Protein GI | 90021026 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000597896 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGTA TTGCTATCAA CGGCTTTGGC CGCATTGGCC GTAACGTTCT CCGAGCCATC
TACGAGCGTA ATCTTCAAAA TGAAATGCAA GTTGTTGCAA TTAACGACTT GGGCTCGCCA
GACATCAACG CTCACCTACT CAAGTACGAC ACCGTTCACG GTCGTTTTGG TTTTGATGTA
GAAGCTTCTG AAGGCGCCAT CCGTGTAAAC GGCGACGAAA TTAAAATCAC CGCCGAGCGC
AACCCAGCCG ACCTACCTTG GGCTGCACTT AACGTAGATA TCGTTTTTGA GTGTACCGGC
CTGTTTGTTG CGCGTGATAA AGCAGCTTTG CACTTAGATG CAGGCGCTAA AAATGTATTG
ATTTCTGCAC CAGGTAAAGA TGTAGATTTG ACTGTTGTTT ACGGCGTAAA CCACGAATCA
ATCACTGCAG ATCACAAAGT TTTGTCTAAT GCTTCTTGCA CCACAAACTG CTTGGCACCT
ATGACTTCTG CCCTGCACTC TGCAATTGGT GTTAAAACAG GTTTGATGAA CACCATCCAC
TCTTACACTA ACGACCAACG TGTAACGGAT GCGTACCACT CAGACACCTT GCGCGCACGC
GCTGCAGCCT TGAACATGAT CCCAACTAAA ACCGGTGCAG CTGCTGCAAT CGGCTTAGTT
ATTCCAGATC TTGCTGGCAA ACTAGACGGC CTCTCTATCC GCGTTCCTAC CGTTAACGTT
TCTTGCCTCG ACTTCACCTT CGAAGCCGCT CGCGATACAA CTGTAGAAGA AGTTAACCAA
GTATTGCGCG ATGCAGCTGC TGGCCCACTA AAAGGCGTTA TGGACGTTAA CACCATACCG
CTGGTTTCTA GCGACTTTAA CCACGACGCA CACTCTTGTA TTGTTGACCT TTCACACACC
CGTGTAATGG GCAACCAAGT TAAAGTATTG GCTTGGTACG ACAACGAGTG GGGCTTCTCC
AACCGTATGC TAGACACCAC TATGGCCATT GTTAAAGCAA ACGCCTAA
|
|---|
| Protein sequence | MPRIAINGFG RIGRNVLRAI YERNLQNEMQ VVAINDLGSP DINAHLLKYD TVHGRFGFDV
EASEGAIRVN GDEIKITAER NPADLPWAAL NVDIVFECTG LFVARDKAAL HLDAGAKNVL
ISAPGKDVDL TVVYGVNHES ITADHKVLSN ASCTTNCLAP MTSALHSAIG VKTGLMNTIH
SYTNDQRVTD AYHSDTLRAR AAALNMIPTK TGAAAAIGLV IPDLAGKLDG LSIRVPTVNV
SCLDFTFEAA RDTTVEEVNQ VLRDAAAGPL KGVMDVNTIP LVSSDFNHDA HSCIVDLSHT
RVMGNQVKVL AWYDNEWGFS NRMLDTTMAI VKANA
|
|---|
| |