| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1305 |
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| Symbol | |
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| ID | 3965328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1696474 |
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| End bp | 1696716 |
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| Gene Length | 243 bp |
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| Protein Length | 80 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920381 |
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| Product | ribonuclease D |
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| Protein accession | YP_526779 |
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| Protein GI | 90020952 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3630] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit |
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| TIGRFAM ID | [TIGR01195] sodium pump decarboxylases, gamma subunit |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00021107 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0271144 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAGACA CACTAGTTCA GCAGGGCTTG GATTTAATGT TTACGGGCAT GGGTACTGTG
TTCGTATTTT TAACATTGCT TGTTATTGGT ACTTTGGCCA TGTCGACCAT TGTGTCTCGT
TTTTTCCATG TGGAGGAGGT TGAGCTACCA AAGCCAGTTG CTAAAGAGAA AGCAGCACCC
GTTAATAAAA AGACGCTTGC GGTTATTCAG GCCGCTGTTC ACGCGCACAG GGCTAAAAAG
TAA
|
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| Protein sequence | MQDTLVQQGL DLMFTGMGTV FVFLTLLVIG TLAMSTIVSR FFHVEEVELP KPVAKEKAAP
VNKKTLAVIQ AAVHAHRAKK
|
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