| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1249 |
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| Symbol | |
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| ID | 3968210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1599354 |
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| End bp | 1600343 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920323 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_526723 |
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| Protein GI | 90020896 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.883014 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.601505 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA ATTTAGATTT TGCCTACGCC CAAGGGCAGC CCACCCAGAC TGCCACCTTC
CGCCAATTAG CGGAGGATTT TATTGTAGAT GAGCAGCTAG GCTTTGAATT TAGCGGTGAA
GGTGAACACC TATATGTTCA AATTAAAAAA ACAGGCGAAA ACACGCAATA CGTTGCTAAA
CAACTGGCGC GCTACTTGGG GGTTAAGCCG GTTGCGGTTG GCTTTAGCGG CCTGAAGGAT
CGTCACGCTG TAACTACCCA GTGGTTTAGC GTGCAATTGC CGGGTAAAAA TATTGATATC
GACTGGGCTG ACTTTATCGA AAAAACGCAG CTCAATGTGG AAGTATTACA GCAAGGGCGG
CACAGCGCCA AATTGCGCCG CGGTCAGCAT TTATGTAACG ATTTTGTTAT TACTTTGCGC
GATATTAGCC AAAGTGATGA CCTAGAAGCG CGATTGCAAA CTGTAGCGGC CAACGGTGCC
CCCAATTATT TCGGTGAGCA GCGTTTTGGT ATTGATGGCG GTAACCTTGC GCGTGCGCAG
GCGTGGTTTA GTGGTGAAGA CCCCATTCGC AACAAAAACA TGCAGGGTAT TATTTTATCT
GCTGCACGCT CCTACCTGTT TAACCTAGTG CTTAGCGAGC GAATAAAGCA AGACAATTGG
CTAGCGCCGA TGGACGGCGA CCCCGCAGAA GTACCAACTG GCCCACTATG GGGCCGCGGC
CGACCTAAAT CGACCGATGC ATTGCTAGAG CTAGAAAACG AAGTACTGGC CCACTTGGAC
CTATGGCGAG ATAAGCTCGA GCACAACGGT TTAAGCCAAG AGCGCAGAGA TTTAGTGCTT
AAGCCTCGTT CATTCTCGTG GCAGTGGCAA GACAATGCCT TGGTACTTAG CTTGTCGTTG
GCCCCTGGGC TATATGCAAC ATCGCTGTTG CGTGATGTAT TGCTATTGAA TAACGTTTCA
GCAGAACAAT ACGCCCCTCC TGCAGCCTAA
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| Protein sequence | MSFNLDFAYA QGQPTQTATF RQLAEDFIVD EQLGFEFSGE GEHLYVQIKK TGENTQYVAK
QLARYLGVKP VAVGFSGLKD RHAVTTQWFS VQLPGKNIDI DWADFIEKTQ LNVEVLQQGR
HSAKLRRGQH LCNDFVITLR DISQSDDLEA RLQTVAANGA PNYFGEQRFG IDGGNLARAQ
AWFSGEDPIR NKNMQGIILS AARSYLFNLV LSERIKQDNW LAPMDGDPAE VPTGPLWGRG
RPKSTDALLE LENEVLAHLD LWRDKLEHNG LSQERRDLVL KPRSFSWQWQ DNALVLSLSL
APGLYATSLL RDVLLLNNVS AEQYAPPAA
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