| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1128 |
|---|
| Symbol | |
|---|
| ID | 3968315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1463570 |
|---|
| End bp | 1465366 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637920199 |
|---|
| Product | amidase family protein |
|---|
| Protein accession | YP_526602 |
|---|
| Protein GI | 90020775 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | [TIGR02713] allophanate hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATT TACCGTTAAC TATTCAGGCA ATAAAAAAGG CCTATGCAGC AAAAACAATA
TCGCCGCGAG AACTTATTTT ACAACTGCGT AGCCAAGCAT TAGCGCAAGC GGATTTTAAC
GCGTGGATAA CCCTATTAGA CGAAGCGCAA CTAGAGCCCT ATTTTGTCGC CTTGGCAAAT
AAAGAAATGG ATGAGCTTGC GTTGTATGGC GTACCCTTTG CTATTAAAGA CAATATTGAT
TTAGCTGGTG TGCCCACTAC CGCAGCGTGC CCAGATTTTA CATATGTGCC CGAATTGTCT
GCCCCCGTGG TAGAGGCGTT AATTAGTGCT GGCGCTATTC CATTGGGCAA AACAAACTTA
GATCAATTCG CAACTGGTTT GGTGGGCACG CGTTCACCCT ATGGCGAAGG TAAAAATGTA
TTCAATCAAG AATACATATC GGGTGGCAGC AGTGCGGGTT CGGCCATTGC AACAGCTTTA
GGGCAAGTAG CCTTTGCTTT AGGAACCGAT ACGGCTGGGT CTGGGCGAGT ACCGGCGGTA
CTAAATAATT TGATTGGTCA CAAACCCACT AAAGGTTTAT TAAGTACTCG CGGTGTTGTA
CCCGCGTGTA GAACGTTAGA TTGCGTAAGC ATTTTTGCGC TGCACGCAGA AGATGCCGCA
CAGGTGCTGG AAGTGGCTGC ACAATATGAT GAGCAAGATG CCTATGCGCG CGTTAATACC
TATGCAAATA AAAAGCGTTA TTTTGGCGCG GTGCCTAGCA GCTTTAAATT TGGCGTGCCA
GACGAACTCG ATTTTTTTGG TAACAGCGAA ACCCAAGCGC TCTTTCAAAA AAGCGTAGAG
CAATTGCAGC AATCGGGCGG TACGCCAGTA TCCATTTCTT TTGCGCCGTT TATAGAAGCG
GCAAAACTTT TGTACGAAGG GCCGTGGGTG GCGGAGCGCT GGTTAGCTAC GCAGAATGTA
AAGCTAGAGT CTATGCTGCC GGTTATTCAA ACCATTATTG GCAATGGCAA TAATGGCAAA
GCAAGCGATG CCTTTGCGGC GCAATATAGG TTGGCAGAAT TAAAGCGCAC CTGCGACGGC
ATAATGCAAG GGCTGGATTG CGTAATAGCA CCCACAATGC CCACCGTTTT TACGCGCGCA
CAAATTGGTG AGCAGCCGGT AAAAAATAAT TCTATTTTGG GCACCTATAC CAATTTTATG
AACCTGCTCG ATTACAGCGC GACTGCCGTG CCTGTGGGCT TTTTATCTAG CGGTGTGGGC
TGGGGGGTTA CACTTTTTGG CAACGCCTTT ACCGATGTTA CCTTGTTGAG CTTCGCCAAT
ATTCTACAGC GCGCGAATGC TACCAATATG GGGGCTACAG CTTACCCGTT GGAGCAAGTT
TCGAGCAGCG CTACGCCATG CCCGCCTACC GAGATAGATG TAGTGGTGTG TGGTGCACAT
CTGGCTGGCC AGCCGCTTAA CTGGCAACTT ACCGAGCGGG ACGGATCGCT AGTCGCATGC
ACTCGCACAT CCCCCAATTA TGCATTGTAT GCACTGCCAG ATGGCAAGCG ACCGGCGCTC
GTTAAATTAA ATGCACCCGG TAGCGCTATC GAAGTGGAAG TATGGCGCAT GCCTGCTGCC
GCCTTTGGCT CTTTCGTGTG TGGCATTCCT GCGCCTTTGG GTATTGGCAA GGTAGAGCTA
GAAGATGGCA CTGAACTGCC GGGGTTTATT TGCGACGGTT ACGGCTTGGA AGACGCCAAA
GATGTATCCA ATTTTGGCGG CTGGCGTAAT TGGTTAAGCG AGAAAGCGGC GAGTTGA
|
|---|
| Protein sequence | MTDLPLTIQA IKKAYAAKTI SPRELILQLR SQALAQADFN AWITLLDEAQ LEPYFVALAN
KEMDELALYG VPFAIKDNID LAGVPTTAAC PDFTYVPELS APVVEALISA GAIPLGKTNL
DQFATGLVGT RSPYGEGKNV FNQEYISGGS SAGSAIATAL GQVAFALGTD TAGSGRVPAV
LNNLIGHKPT KGLLSTRGVV PACRTLDCVS IFALHAEDAA QVLEVAAQYD EQDAYARVNT
YANKKRYFGA VPSSFKFGVP DELDFFGNSE TQALFQKSVE QLQQSGGTPV SISFAPFIEA
AKLLYEGPWV AERWLATQNV KLESMLPVIQ TIIGNGNNGK ASDAFAAQYR LAELKRTCDG
IMQGLDCVIA PTMPTVFTRA QIGEQPVKNN SILGTYTNFM NLLDYSATAV PVGFLSSGVG
WGVTLFGNAF TDVTLLSFAN ILQRANATNM GATAYPLEQV SSSATPCPPT EIDVVVCGAH
LAGQPLNWQL TERDGSLVAC TRTSPNYALY ALPDGKRPAL VKLNAPGSAI EVEVWRMPAA
AFGSFVCGIP APLGIGKVEL EDGTELPGFI CDGYGLEDAK DVSNFGGWRN WLSEKAAS
|
|---|
| |