| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1109 |
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| Symbol | |
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| ID | 3968296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1434761 |
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| End bp | 1438651 |
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| Gene Length | 3891 bp |
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| Protein Length | 1296 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920180 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_526583 |
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| Protein GI | 90020756 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTCAGC AGCAAGTGCA AGATTTACCT ACATTTAACG CCAATAACGT ATGTGCTTGG
CACGCTAAAA AGCTTACCTC TCTGCGTGAG AAAATCATCG CGCGTATTAA ACGCGAGCAG
CCAGTCGATA AGCTTGTTGA GCAATTAGCT AAAGACATCG AGCAAGCCCA AGCTGTTTTG
GCTGCAAGAA AAGCAGCGGT TCCTGCTATT TCGTTTCCAG AGCAGCTACC TATTAGCGAA
AAACGGGCTG ATATTGCCGA GTTAATTGCC AACAATCAGG TTGTTATTCT TGCCGGTGAG
ACCGGCTCAG GTAAAACCAC ACAGCTGCCC AAAATATGTT TAGAGTTAGG GCGAGGTATT
CGCGGTTTAA TTGGACACAC CCAGCCGCGT CGTATTGCTG CTCGTACTGT TGCCGATCGC
ATAGCGCAAG AACTACAGGT ACCACTGGGT GATGCCGTTG GTTACCAAGT GCGTTTTACC
GACCACGTTA CCGACTCCAC ATTAATTAAA TTAATGACAG ACGGCATTTT GCTGGCCGAA
ATTCAGCAAG ACCCGCTGCT GTTAAAATAC GATACGTTAA TCATCGATGA AGCTCACGAA
CGCAGCTTGA ATATCGATTT CTTGTTGGGC TATTTAAAAC AAATACTCGC AAAACGCCCC
GATTTAAAAT TAATTGTCAC CTCCGCAACC ATCGACCTTG ATCGTTTTTC TAAGCACTTC
AACAATGCGC CGGTTATCGA AGTATCGGGT CGTACATACC CGGTGGAGGT GTTGTATCGC
CCATGGCATG ACGAGTTCGA AGACCTTACG CAAGCCATCG TTAACGCTGT GGAAGAAATA
CAGTCTATAT CTAAAGGTCG CGGCGGCGAC GTGTTGGTAT TTTTAAGTGG CGAGCGCGAT
ATTCGCGAGG CATCTCATGC TCTTAAAAAA GCCAATTTGC CGCACTGGGA AATAGTGCCG
CTTTACGCTC GGTTAAGTTT AGAAGAGCAA AACCGTGTTT TTAGTCCTCA CAAAGGGCGA
CGAGTGGTGT TGGCAACTAA CGTGGCAGAA ACATCGCTTA CTGTGCCGGG TATTCGCTAC
GTTATCGACC CAGGCACAGC AAGAATAAAG CGCTACAGTT TGCGAACAAA AGTAGAGCGC
TTACCGGTAG AAAATATTTC TCAGGCAAGC GCCAATCAAC GTAAAGGGCG ATGCGGCCGT
GTGAGTGACG GCGTGTGTAT TCGCTTGTAC GACCGCGAAG ATTTTGAAAG CCGGTCGGAA
TTTACCGACC CAGAAATTTT ACGCAGTAAT TTGGCAGCAG TCATTTTGCA AATGCTGCAA
ATGCGTATTG GTGATGTACG TAAATTCCCC TTTGTAGATA AGCCCGATAA TAGGCTTATT
AACGATGGTT TTAAGCTGCT TGAAGAGCTA GGCGCGGTAG ATAAAAGCAA TCGCGTTACC
AAGCTAGGAC GCGATTTACA GCAGTTGCCG CTAGACCCGA AGTTTGGGCG CATGATTGTC
GCTGCGGCCG AGCAAGGCTG CCTGCGTGAA CTGCTTATTA TTGTAAGCGG GCTAACCATT
CAGGACCCGC GCGAACGCCC TGCAGATAAG CAGCAAGCCG CAGATGAAAA GCACCGACGC
TTTTGGGATG AAAAATCCGA TTTTCTTTCG CTGGTCAATT TGTGGCACTA CGTAGAAGAA
CAGCGCCAAG AGTTATCGCA AAATCAATTG CGTAAACTTT GCCAAAAAGA ATTTTTAAAT
TTTATGAGGC TGCGCGAGTG GCGCGAGCTG CACCACCAGC TGCGCGTAAC CATAAAAAAA
ATGGGTTTCA AAGAAAACCA AGAGCCAGCG AGTTACGATG TGGTTCACGA GGCGTTACTC
ACGGGGTTGT TGTCTAATAT GGGCAACAAA AACGAAGAAC CGGACGCGCG TGATTACCGC
GGTACACGCA ACAGAAAGTT TATGATTTTT CCTGGCTCAG CACTGCGAAA AAAACGACCG
AAATGGTTGT TTGCAGCGGA AATGATAGAA ACCAGTCAGG TATATGCGCA TTGCGTAGCG
CAAATGGAGC CGGAGTGGGC ATTAAAAAGT GGTGCGCATT TACTTAAATA TAATTATTTC
GAACCCCACT ACGATAAGCG CGCAGGACAA GTAAAAGCGT TTGTGCGTAT TAGCTTGTTT
GGTTTAGTGC TCATTGAGAA AAAGCGCGTA GGCTACAGCA AAATAGACCC AGCCGAAGCG
CGCGAAGTGT TTATTCGCGC AGCCCTTGTT GAGGGGCAGT ACCGCGGTAA AGGCGCATTT
TTTAACAAAA ATAATGCACT TATTGCCGAG GTAGAAGATC TAGAAGCAAA ATCCCGCCGT
AAAGATATTA TGGTGGATGA TGAAGTGTTG TTTAACTTCT ACAACGAGAT TATTCCGCCA
GATATATGTA ACTTGGCTGG CTTTGAACAC TGGCGCAAAA AATTAGAAGA AACCCAGCCA
GATGCGTTAC TGCTTTCGCG CGATTTACTT ATGTTGCACG GGGCAGAAGG TGTTACCGAG
GCGCAGTTCC CCGATCAGTT AGATTTCGAC GGTGTTACCT TGCCGGTAAG CTATCATTTT
GAGCCCGGCC ACCCGCAAGA TGGCGTGAGT GTAAAAGTGC CGGTTACTTT GTTGCATATG
CTGTCGGACT TGTACTTACC GTGGCTGGTG CCAGGGTTGC TGCGCGATAA GTGTATTGCT
TTGGTAAAAG CTCTGCCTAA GGCAAAGCGC AAAAAAGTTG TTCCCGTGCC CCAGTTCGTA
GACCGCGCCA TGGCACGTAT GACACGTAGC AAAGCATCGC TTACCGAGGC GCTAACCCGC
GAATTAAAGC GCTTGGCGGA TATAGAGCTA ACCGAAGACG ACTGGGACGA AACTGCACTT
GAACCGTTTT ATCACATGAA CGTAATTGTG GTGGATGCGG CGGGTAAGCC ACTAGACCAA
GGGCGCGATT TGAATGCGTT GCGCGAACGC TATCGCGGGC ACGTGCAGGA ATCGCTGCAG
TCTGCCGGCT CGTCTTTTGA GCAGACCGAG CTTACCGGCT GGACGTTTGA GTCCTTGCCC
GAAACCGTCG ACTTGGATAA AGGCGGAGTA ACAGTGCGAG GCTTTCCTGC ATTGCAAGAT
GATACAAGCT CTGTTTCGCT GCGCGTATTA GATAACCCTG CAGAAGCCTA TCAGGCGTCA
TTAGCTGGGT TGGCGCGACT GGCATGCTTG CAGCTTGGCC AAAGTGTTCG CTACCTGCAA
AAGCAATTGC TTAAAGGGAA GGATATAGGG CTAACAATGG TCGACTTGGG TAAACGCGAC
CAAGTGGTGG ACGATATTCT AATGGCGGCG GTTTACCGTG CATGCTTTTT AGATAAGCCT
TTCCCTAGAA CAGCAACCGA ATTTAAACAA TGTGTAGATG CTGGTGCGGG GGAGCTTGTA
TCCATAGCGC AGGAATATGA AACATTGTTG CTCGATATTC TTAAGTATGT GGTCGCAATT
AAAAAGGCGA TGAAGTCCAA TAAATCGGCC TTCGCACTGG CTTTGGCTTT TGGTGATATT
AACCAACAAC TGGCACAACT AATTTATAAA GGGTTTATGT TTGCTACGCC TGTGCAATGG
CTCAAGCAAT ATCCTAGGTA TTTAAACGCC ATTGAAGTAC GCATTGAAAA AGCGGCGCAA
AACCCGCAAA AAGATCGTGT CGCGATTGCA GAATTAATCG GCTTGTGGCA AAAGCACCAA
GACAGATTAC TCAAAGAGGG TAGTCACAGT TATATTCAAA ATACAGCGTG GCAAGAGTAC
CGCTGGATGC TTGAGGAATT GCGCGTTTCT TTATTTGCGC AAACCTTAAA AACCTTAATG
CCAGTTTCAG CAAAGCGGTT GAATAAGCAG TGGCAATTAA GCGAGCAATA A
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| Protein sequence | MSQQQVQDLP TFNANNVCAW HAKKLTSLRE KIIARIKREQ PVDKLVEQLA KDIEQAQAVL
AARKAAVPAI SFPEQLPISE KRADIAELIA NNQVVILAGE TGSGKTTQLP KICLELGRGI
RGLIGHTQPR RIAARTVADR IAQELQVPLG DAVGYQVRFT DHVTDSTLIK LMTDGILLAE
IQQDPLLLKY DTLIIDEAHE RSLNIDFLLG YLKQILAKRP DLKLIVTSAT IDLDRFSKHF
NNAPVIEVSG RTYPVEVLYR PWHDEFEDLT QAIVNAVEEI QSISKGRGGD VLVFLSGERD
IREASHALKK ANLPHWEIVP LYARLSLEEQ NRVFSPHKGR RVVLATNVAE TSLTVPGIRY
VIDPGTARIK RYSLRTKVER LPVENISQAS ANQRKGRCGR VSDGVCIRLY DREDFESRSE
FTDPEILRSN LAAVILQMLQ MRIGDVRKFP FVDKPDNRLI NDGFKLLEEL GAVDKSNRVT
KLGRDLQQLP LDPKFGRMIV AAAEQGCLRE LLIIVSGLTI QDPRERPADK QQAADEKHRR
FWDEKSDFLS LVNLWHYVEE QRQELSQNQL RKLCQKEFLN FMRLREWREL HHQLRVTIKK
MGFKENQEPA SYDVVHEALL TGLLSNMGNK NEEPDARDYR GTRNRKFMIF PGSALRKKRP
KWLFAAEMIE TSQVYAHCVA QMEPEWALKS GAHLLKYNYF EPHYDKRAGQ VKAFVRISLF
GLVLIEKKRV GYSKIDPAEA REVFIRAALV EGQYRGKGAF FNKNNALIAE VEDLEAKSRR
KDIMVDDEVL FNFYNEIIPP DICNLAGFEH WRKKLEETQP DALLLSRDLL MLHGAEGVTE
AQFPDQLDFD GVTLPVSYHF EPGHPQDGVS VKVPVTLLHM LSDLYLPWLV PGLLRDKCIA
LVKALPKAKR KKVVPVPQFV DRAMARMTRS KASLTEALTR ELKRLADIEL TEDDWDETAL
EPFYHMNVIV VDAAGKPLDQ GRDLNALRER YRGHVQESLQ SAGSSFEQTE LTGWTFESLP
ETVDLDKGGV TVRGFPALQD DTSSVSLRVL DNPAEAYQAS LAGLARLACL QLGQSVRYLQ
KQLLKGKDIG LTMVDLGKRD QVVDDILMAA VYRACFLDKP FPRTATEFKQ CVDAGAGELV
SIAQEYETLL LDILKYVVAI KKAMKSNKSA FALALAFGDI NQQLAQLIYK GFMFATPVQW
LKQYPRYLNA IEVRIEKAAQ NPQKDRVAIA ELIGLWQKHQ DRLLKEGSHS YIQNTAWQEY
RWMLEELRVS LFAQTLKTLM PVSAKRLNKQ WQLSEQ
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