Gene Sde_1086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1086 
SymbolanmK 
ID3968250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1388225 
End bp1389340 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content54% 
IMG OID637920154 
Productanhydro-N-acetylmuramic acid kinase 
Protein accessionYP_526560 
Protein GI90020733 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2377] Predicted molecular chaperone distantly related to HSP70-fold metalloproteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0150902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.107543 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCCT CTTTGTTTGT AGGCGTTATG TCTGGCACGA GCGCAGATGG CATTGATGTC 
GCGCTCGTAG ATTTTAGCCA AGCTACACCT GCACTAGTAG GCAGCGAATC GCATGCCTAC
CCCAACCACA TTCGCGAGCA CGTTTTAGGC TTGTGCACAC CCGCCAACAA CGAAATAGAC
GCTCTCGGTC AGCTGGATGT AGAATTGGGC AAATTGTACG CCCACGCGGT GAACTCACTA
CTGGCCAACA CCCAAACACC CGCAGCACAA ATCCAAGCCA TTGGTTGCCA CGGCCAAACC
TTGCGCCACC GCCCGCTAGG CAGCGGTTAT GCTAGCCCGT TTAGCTTACA AATTGGCGAT
CCAAACACTA TTGCTGCCCT TACCGGCATT GCTACGGTGG CCGATTTTCG TCGCAAAGAC
GTGGCCCTAG GCGGCCAAGG AGCACCACTT GTGCCAGCGT TTCATGCGGC TGTTTTTGGC
AGCACTACAA CCGATAGATG TATCGCCAAC ATTGGCGGTA TAGCTAACAT TACCTGCCTA
CCCGCAAATA GCCATATTGC TGGCTACGAT ACAGGCCCTG GGAACGCGTT GATGGACGCA
TGGATAGAGG CCAATCAAGG CGCTAAATAC GACGCAGGTG GCGCGTGGGC GCAAACCGGC
AAGCTTAACC AGCCGCTGCT AGAAATATTG CTGCAACACC CCTATTTCGC GCTGCCAGCC
CCTAAAAGCA CTGGCCGCGA AGACTTTAAT ATGACATGGC TACAGGCCTG TCTAAACCAA
ACGAATTTAC CGCTACCACC CGAAGATGTG CAGGCCACGC TCACAGAATT GACGGCTATA
AGCCTAACCG ACGGCGTAAA ACGAAGCTGC CCCAACGCTG AGCTGGTCAT TTGTGGCGGC
GGAGCCTTTA ACACCGCCCT ACTTGAACGC ATTCAACACC ATTACCCCCA AAAGCCCACA
GTAACGAGCC AGCAGCTTGG TATAGCACCA ACATGGGTAG AAGCCATGGC CTTTGCTTGG
TTGGCTATGC GCAGGCTAGA AAACCAACCG GGCAATGTCC CTGCAGTAAC TGGCGCTAGT
CGTGAAGCGG TGTTGGGCGG CATATACACA CCCTAA
 
Protein sequence
MKPSLFVGVM SGTSADGIDV ALVDFSQATP ALVGSESHAY PNHIREHVLG LCTPANNEID 
ALGQLDVELG KLYAHAVNSL LANTQTPAAQ IQAIGCHGQT LRHRPLGSGY ASPFSLQIGD
PNTIAALTGI ATVADFRRKD VALGGQGAPL VPAFHAAVFG STTTDRCIAN IGGIANITCL
PANSHIAGYD TGPGNALMDA WIEANQGAKY DAGGAWAQTG KLNQPLLEIL LQHPYFALPA
PKSTGREDFN MTWLQACLNQ TNLPLPPEDV QATLTELTAI SLTDGVKRSC PNAELVICGG
GAFNTALLER IQHHYPQKPT VTSQQLGIAP TWVEAMAFAW LAMRRLENQP GNVPAVTGAS
REAVLGGIYT P