| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1079 |
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| Symbol | |
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| ID | 3968243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1379562 |
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| End bp | 1381646 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920147 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_526553 |
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| Protein GI | 90020726 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.240118 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAAA CCAGAACAAT TAGACTGTTA ATTCTAAATG ACTCCCGTGC CGAAGCTGAG
CGGCTAACAA GCATGCTCCA CAATGCCGGC AGACCAGCAC GAGCCCAATA CGTAGAATCC
GACGAAGCAC TTAACAAGTT ATTGCAAGAG AAAGGCTGGG ACCTATTAAT TGCTCACGAT
GAGACCACCA ATCTTGTTCC GCAGGATGCA ATTAGAGTTA TCCGTCGGCT AAATAAAGAT
ATTCCTACCA TATTACTTAC TGATAAAGAA GGCTCCCATC CCGTTGTAGA GGGGATGAAA
ATGGGCGCTG CAGATGTTGT GCGTTTAGAT GAAGACCAAC ATCTGCTATT GGTAATAGAA
CGCGAACTAA ACGCCCTCGA GCAGCGAGAG CACAGACGCT TTGCCGAACG CCGCCACAAA
GAGGTTGAAC GCCGCAATCA ACAACTATTA GACAGCTCGC GAGATGCAAT AGCCTTCGTT
CAAGACGGCA TGTTTTTATA CGCTAATGAT TCCTTTGCAG AACTGCTAGA TCACGAGTCC
CGCGACGACA TTGAATGTAT GCCGGTAATT GATGTTATTG CCGAAGCAGA TCAAGCCGCT
GTTAAAAAAT TCTTAAAAGA ATTCACCTTA AAAGGCAGTG ATGTCGATAC TACTGCTCTA
GAGTTTTCAG CACTACTTGC AGACGACAGC ACCAGAAAAT TAAAAGTAGA CGTGCGTAAA
GCAACCTACG ACGAAGAAAG CTGTATACAA TTTGTTGTGC GCGCCAATGT GACAGACAAC
GAAGAGCTAG AAGCGCAACT CGCACAAATT AAAAACCAAG ATATCGCCAC CGGCCTATAC
AACAAAACTT ACCTTATAGA TATTCTCGAC AAAGAAGTAA ACAATGCCGT AAATGGCGTT
TACAACAGCG CCCTATTCCA TATAGGTATC GATGCATTTT CAGAAACAGT GCAAAGCAAA
GTGGGTATCG CATCCGCCGA CTTAGTGGTT GCCCAAATTG CACAATATGC AGCAGAACTC
ATGAAGAAGG GCGATACACT TTGCCGCTAT AGCGAAGACT CTTTCATGGT GTTGATACCC
AAAATCGACC CTCAGACAGC AGCCCAACGA GCAGAAAAGA TTTGCCAACA ATTACGTGAC
TATATTGTGG ATGTAGATGG CTCCACAATG CAATTCACCT ACAATATTGG TATATCTCTA
ATTAACGAGA TTTCTACCAA GGCCGACATC CCTATTGATC ACGCGCACAA AGCGCTTGAG
CTTGCACGTA AATCCGACGA CGCTTCCGTT AAAATTTACG AGCCAGAAAA TAAAAAAGAC
ACCAAGAAAA ATATTGCTAT CAAAGTCCAG CAGGCGCTGG ATCAAGGTAA ATTCAAGTTA
CTGTTCCAAC CAATACTTAG CTTGCGCGGC TCGGAGAAAG AGCACTACGA GGTATTGCTG
CGCATGGTTG GCCCAGACGA CGATGAAGAA GTATCGCCGA CAGAGTTTTT ATCTAGCGCA
GCCGAAATTG GCGCCACAAC CAAAATTGAT CGCTGGGTGA TTTTAGAATC TATTAAGATT
TTATCCGAAC ACAGATCGAA CGGTAACAAC ACTCAACTGC TTATCAACTT AAGCCGAGAG
TCCATGCTAG ATGCCACCCT ACCACCTTGG TTAGGCGTTG CATTTAAAGC CGCGAACCTA
CCTAAAGATT CTGTGATATT TCAACTAAAT GAAATTGATG TAAACGATCA TCTAAACGTT
GCAGCAGACT TCACCAAGAA AGTGGCCGCC CTAGGCTCGC AATTAAGTAT TAATCGCTTT
GGCTGCGCCC TAAACCCATT TAAGGCGCTA GAAACAATCA AAGTACAATA CATTAAAATT
GACGGCTCGT TCACGCAAGA GCTGCAACAA AACGGCGAAG ATACCCAAAC ACTTAACGAG
CTTGTAAGTC AGCTACACCA ACTGGATATG ATTACCATTG TTCCATTTGT AGAGAACGCG
AGTATTCTTT CTAAACTTTG GCAGTCCGGT GTGCACTACA TTCAAGGCTT CTACCTGCAA
GGGCCATCCG AGCAGATGAA TTACGACTTT GATATGGAAA GCTAA
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| Protein sequence | MSQTRTIRLL ILNDSRAEAE RLTSMLHNAG RPARAQYVES DEALNKLLQE KGWDLLIAHD
ETTNLVPQDA IRVIRRLNKD IPTILLTDKE GSHPVVEGMK MGAADVVRLD EDQHLLLVIE
RELNALEQRE HRRFAERRHK EVERRNQQLL DSSRDAIAFV QDGMFLYAND SFAELLDHES
RDDIECMPVI DVIAEADQAA VKKFLKEFTL KGSDVDTTAL EFSALLADDS TRKLKVDVRK
ATYDEESCIQ FVVRANVTDN EELEAQLAQI KNQDIATGLY NKTYLIDILD KEVNNAVNGV
YNSALFHIGI DAFSETVQSK VGIASADLVV AQIAQYAAEL MKKGDTLCRY SEDSFMVLIP
KIDPQTAAQR AEKICQQLRD YIVDVDGSTM QFTYNIGISL INEISTKADI PIDHAHKALE
LARKSDDASV KIYEPENKKD TKKNIAIKVQ QALDQGKFKL LFQPILSLRG SEKEHYEVLL
RMVGPDDDEE VSPTEFLSSA AEIGATTKID RWVILESIKI LSEHRSNGNN TQLLINLSRE
SMLDATLPPW LGVAFKAANL PKDSVIFQLN EIDVNDHLNV AADFTKKVAA LGSQLSINRF
GCALNPFKAL ETIKVQYIKI DGSFTQELQQ NGEDTQTLNE LVSQLHQLDM ITIVPFVENA
SILSKLWQSG VHYIQGFYLQ GPSEQMNYDF DMES
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