| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0997 |
|---|
| Symbol | |
|---|
| ID | 3965122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1279011 |
|---|
| End bp | 1279910 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920064 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase-like |
|---|
| Protein accession | YP_526471 |
|---|
| Protein GI | 90020644 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000000450509 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTTTTA AAATACTATC TTGGTGTCCT AATCGTGAGC TCGAGGCTGT GCTGTCGGCA
ACACTCGAAG ATTTACCGTA CGAAATTGTT GTGCAGGATG ATGCCCAAGC TTCTAACCCC
GCGGCTAGGG AGCAGTGGCT GGAGTCTGTG CGCCCCAACG CGATAATCAG TTTACTGCCT
TCTACTCTTG CAGATATCGA TGACGCTTAT CTCGAGCAAG TGAGCCAAGT GGTGGCTTAC
TGTGCAGTGA ATAATGTTCC TATTATTCAA GTCTCCTCAT ACCGTGTTTT TGGTGAAGGC
TATTCTGTTA CTGCTCTGCA GGAAGATGCA GAGCCCGGTG CGCAGGATGA GCTGGGGGTG
AGGCTTAATA AGCTAGAAGC ACTGTACGCT AACCTTTCTC AAAAAATTAT CGTGCGCACT
GGGTGGTTGT TAAATAGCGC CGTCGATAGT GTCTTTGCGC AATTAATTCC GCCGCTGCTT
GAGCGCGATA GCAAGTTGGT TGTATCGGAT CATCACTTTG GCTGCCCTTT ACCGAAAGAG
TTTTTGGCCA AGGCCTTGGT TGCCATGTCG CAGCAAATAC TTTGTGGGGC TGAAAACTGG
GGTGTGTTCC ACCTACACAG TGCAGATAGT TGCTCTGAAG CCGAGCTGGG TGACCAGTTG
GTGCGTGTAT TTAATGCCGA TTATCAGCAA GACTTGCAGT TGCCAACTGT TGCCAGTAAA
GACGACAGTC GATACCACTT TGTGGGTAGT GCAAATATTC TAGGGCGTCG CTGTACCGAT
AACTTTGGCA TCCAATTGCC CACGTGGCGA AAGGGCTTTA AGAACCTTGT GGCACAATGG
TTGAAAGGTA ATGCTCAATA TAGCCATCTG CTCGATTTAA AAGCATCAGA TAAAAAGTAA
|
|---|
| Protein sequence | MAFKILSWCP NRELEAVLSA TLEDLPYEIV VQDDAQASNP AAREQWLESV RPNAIISLLP
STLADIDDAY LEQVSQVVAY CAVNNVPIIQ VSSYRVFGEG YSVTALQEDA EPGAQDELGV
RLNKLEALYA NLSQKIIVRT GWLLNSAVDS VFAQLIPPLL ERDSKLVVSD HHFGCPLPKE
FLAKALVAMS QQILCGAENW GVFHLHSADS CSEAELGDQL VRVFNADYQQ DLQLPTVASK
DDSRYHFVGS ANILGRRCTD NFGIQLPTWR KGFKNLVAQW LKGNAQYSHL LDLKASDKK
|
|---|
| |