Gene Sde_0978 details

Gene Information

• Locus tag: Sde_0978
• Symbol: rplO
• ID: 3966220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Saccharophagus degradans 2-40
• Kingdom: Bacteria
• Replicon accession: NC_007912
• Strand: +
• Start bp: 1253468
• End bp: 1253902
• Gene Length: 435 bp
• Protein Length: 144 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637920045
• Product: 50S ribosomal protein L15
• Protein accession: YP_526452
• Protein GI: 90020625
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0200] Ribosomal protein L15
• TIGRFAM ID: [TIGR01071] ribosomal protein L15, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.00708309
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00387669
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCGTTTAA ATACTTTAAG TCCAGCACCT GGCCGCGTTT CTGCTAAGAA GCGTGTAGGT 
CGCGGTATCG GTAGTGGTTT AGGTAAGACT GCAGGCCGTG GTCACAAAGG TTTAAAATCA 
CGTTCTGGTG GTTCTGTTAA GCCTGGTTTC GAAGGCGGTC AGATGCCTTT GCAGAAGCGT 
CTACCTAAGT TTGGTTTTAC TAGCCGTATT TCTCGCGTAA CTGCAGAAGT TCGTTTAGCT 
GAGCTAAACA AAGTGGAAGC TGATATTATT GATATCGAAG CCTTAAGAGC TGCAGACTTG 
ATTGATAACA ATATCAAACG AGCCAAAGTA TTTCTTTCTG GCGAGTTAAC CAAAGCTGTT 
ACAATAAAAG GCTTGATGGT TACTAAAGGT GCTAAAGCAG CAATCGAAGC TGCTGGCGGA 
AAGATTGAAG AATAA 

 

Protein sequence

MRLNTLSPAP GRVSAKKRVG RGIGSGLGKT AGRGHKGLKS RSGGSVKPGF EGGQMPLQKR 
LPKFGFTSRI SRVTAEVRLA ELNKVEADII DIEALRAADL IDNNIKRAKV FLSGELTKAV 
TIKGLMVTKG AKAAIEAAGG KIEE