Gene Sde_0920 details

Gene Information

• Locus tag: Sde_0920
• Symbol: rplK
• ID: 3965561
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Saccharophagus degradans 2-40
• Kingdom: Bacteria
• Replicon accession: NC_007912
• Strand: +
• Start bp: 1185074
• End bp: 1185505
• Gene Length: 432 bp
• Protein Length: 143 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637919987
• Product: 50S ribosomal protein L11
• Protein accession: YP_526394
• Protein GI: 90020567
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0080] Ribosomal protein L11
• TIGRFAM ID: [TIGR01632] 50S ribosomal protein L11

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.000000795353
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 2
• Fosmid unclonability p-value: 0.00000174139
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCTAAAA AAGTAGAAGC TTATATCAAG CTGCAAGTTG CAGCAGGTAA AGCAAACCCA 
AGTCCCCCTG TTGGTCCAGC TTTGGGTCAA AAGGGCGTAA ACATCATGGA GTTCTGTAAG 
GCGTTTAACG CACAGACTCA AGGTATGGAG CCAGGTTCAC CAGTACCAGT AGTTATATCT 
GTGTACAGTG ACCGCAGCTT TACCTTCACC ATGAAAACCC CTCCTGCCTC TTTCTTACTT 
AAGAAAGCAG CTGGCCTTAA AAGTGGTAGT GCCCGTCCAA ATACTCAAAA AGTGGGTAAG 
GTTACGCGCG CGCAATTGGA AGAAATTGCA ACCATTAAAA TGGCAGACTT AACTGCAGGT 
GATATGGACG CAGCTGTTCG CACTATTGCT GGTTCTGCTC GTGCAATGGG CTTAGAGACT 
GAGGGCGTAT AA 

 

Protein sequence

MAKKVEAYIK LQVAAGKANP SPPVGPALGQ KGVNIMEFCK AFNAQTQGME PGSPVPVVIS 
VYSDRSFTFT MKTPPASFLL KKAAGLKSGS ARPNTQKVGK VTRAQLEEIA TIKMADLTAG 
DMDAAVRTIA GSARAMGLET EGV