| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0875 |
|---|
| Symbol | |
|---|
| ID | 3968809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1132283 |
|---|
| End bp | 1134811 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637919937 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526349 |
|---|
| Protein GI | 90020522 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5373] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0738842 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGGAT TATACTCCAA GGTACAGGGT GCCAATGCGC CCACCAACTT TCGCTATTCT
ATGAGGAGGC GGTTCGTGCC CGAGAATACC AAGCACAAGA TCTCCCCTAA AGTGGTACAT
TTGGAGTCTG AGAGTCACAG AATGACCAGA GCCCGCTTGG CACGCTTGCC AGCGCCAGTG
CACGCTGTAC ACGAAAAAAG TCAGTTGCTG TTAGCTCAAA AGCTAAAGGT CTTTTTTGAT
CGCGCTGACG ATTCTTTATT CGAAATGGCC GATAAGGCTC ACTCAAACCA AGAGCAAAAC
CTCTTTTTTG ACTCTATGCG CGAAGTGCGC GTGCAGCGTC GCGGTATTGA AAAACGTTTT
ACCGAAGCCT TAGAAGACGC ATTTGCTGCG CTTATTGTCA GCCCTAGCGA ATCCGCAGCG
AGTGCCTCCG CTGATGATTT TACGGTAGAC GGTTTGTCGC TAGTTGAAAA CGACGACTTA
GAAGAAATGG TCGCGTTAGA TAACTCAATT AACCGAGCAA ATGCAGAGTT TGGCGAGGCT
GTACAACAAA TTAGCCTTCG TTTAGATAGT TTGGTTCCGG TTAAGGTATA TCAAAAGAAC
AACCCTGTAG GGCCAGATTT ACTGTGTCAA ACAATTATGA CGCAGGTGAA GAAGCTGGAC
GTTGGCATTA AAGCCAAATT AATCCTCTTT AAGCTATTCG ACAAAGTTGT TATTGCTGGG
TTGGGCGAAG TATATGGTGC CATCAACCAG TTGTTGGTCG ATCACAATGT TTTACCCTCT
CTAAGTTCAG CTACTCGTTC AGGCCAGCGC CACGGTCGCA GGGCTTCCGA TCGCGCCGGC
GACGCAGGTC AGGTTCCTCA AAACGCCGCT GCCCCTTCAT CAGATCAGCA AGCGCCTGCA
CAAGAACAGC GTCAGGCGGG AACGCCAGAT CGTCGCGCTA ATCCGTCTGG TCAGTTGCAG
TCTCAGGTAG CCGAGTCTGC AACTCAGTCT CACCTCAGCC CAGAGGTGAT TGCCGCGCTG
CAAGGTTTGT TCGGCAACAA TACTCAGTCC AATAGTAGCG CGGGTTTGCT CAATGTATTG
TCGCTGGCGC AGCGTTTGCC TATGCCTGCT ACTACGTCTG CTTCTGGTAT TAATGTACGC
GCGTTAATTT CTGATATACA GCAGCGTCAA GGTGGCACAG ATACCCAAAT AGCACGGATG
GATGAGGAAG TAATCAACCT CGTTAACATG CTGTTTGAAT TTATTTTAGA CGATCGCAAT
CTCGCCAAGC CCATGAAGGC GTTAATTAGC CGTATGCAAA TACCGGTTAT AAAAGTTGCG
CTGCTTGATA AATCCTTCTT TACCAAAGGC GGGCACGCTG CTCGTCGCCT ACTCAGCGAG
ATGTCTAAAG CGGCATTGGG CTGGCAGGGA GATAGCGAAA CCGGTAAGCG CGACCCGCTT
TACCGTAAAA TGGATGAAAT CGTTCGCAAG TTATTAAACG AGTTTGACAC TGATGTGTCA
CTCTTTTCAG ATTTGCTTGC TGACTTCAGT TCATTTATCG AAAAAGAGAA ACGACGTTCG
GCTGTGTTAG AGCGCCGCAC CCTTGATGCG GAAGATGGCA AAGCTAAAGC TGAAGTGGCA
CGCGCCACGG TAGCGCTAGA AATTGAACTG CGTACAGTTA ATGAAGCCTT GCCAGAAGTT
GTTTACCAGC TTATCGATAG TGTGTGGAGC AATGTACTTT TTGTTACTTC GCTAAAGCAC
GGTTATAAAT CTGAAGCTTG GTTGGGAAGC TTAAAAACCT TGGAAGACTT GGTTTGGAGT
GTGAAGATTC CAGCTACCGA TGAAGAGCGT AAGCAGTTGA TTCGCTTGGT GCCAGATTTA
TTGAAACGCT TGCGTGCAGG GTTCGATAGC ATCTCGTTTA ACCCGTATGA AATGTCCACT
TTATTTAAAT CTTTAGAGGA TGTGCATTTA GCATGTATTC GTGGCGTAGA AGTTAAGCGC
CGCGCACCTG CGGGTAAAGT GCAAAAAACT ACTGCGGCCA AGCCTCAGGT TGCTGCACCT
CAGCCAGCGC AAAACGAAGA GCCTCCAGCT AAGCCAGCAC CTGTGGCCAA AACTGCTGCA
CCTGCACCGG TTGCTCCAAA AGTTGAAGCT CCTCAGCCGG CTGCCAAGCA AGCTGCTGCG
CCAACTCAGC CCGCGGCCCC TGTAAGTGTT GCAAGCCCAG CGCCAGCGGC ACCTATCGCG
CCGGTAGCGC CAAATGATTT GCCTGATACC GATACCGATA TGCGCCAGGT TGCCGGCTTT
GTGCAAGGTG CTTGGTTCGA AATGGTGGAT GACAAAAATA GTGTGGTGCG TTGTCGATTA
GCAGCATTTA TTAAGCCAAC AGGTAAATAT ATATTTGTTA ACCGCAATGG CATGAAAGTG
GCCGAAAAAA CGCAACAAGA GTTGGCGTTG GCGCTTAAGA AAAACCGCTT GCGAGCGTTG
GATAACAGCG TGCTATTCGA TAGAGCGCTA GAAACGGTTG TAAGTGGTAT GCGTAAACCT
CGTAATTAA
|
|---|
| Protein sequence | MVGLYSKVQG ANAPTNFRYS MRRRFVPENT KHKISPKVVH LESESHRMTR ARLARLPAPV
HAVHEKSQLL LAQKLKVFFD RADDSLFEMA DKAHSNQEQN LFFDSMREVR VQRRGIEKRF
TEALEDAFAA LIVSPSESAA SASADDFTVD GLSLVENDDL EEMVALDNSI NRANAEFGEA
VQQISLRLDS LVPVKVYQKN NPVGPDLLCQ TIMTQVKKLD VGIKAKLILF KLFDKVVIAG
LGEVYGAINQ LLVDHNVLPS LSSATRSGQR HGRRASDRAG DAGQVPQNAA APSSDQQAPA
QEQRQAGTPD RRANPSGQLQ SQVAESATQS HLSPEVIAAL QGLFGNNTQS NSSAGLLNVL
SLAQRLPMPA TTSASGINVR ALISDIQQRQ GGTDTQIARM DEEVINLVNM LFEFILDDRN
LAKPMKALIS RMQIPVIKVA LLDKSFFTKG GHAARRLLSE MSKAALGWQG DSETGKRDPL
YRKMDEIVRK LLNEFDTDVS LFSDLLADFS SFIEKEKRRS AVLERRTLDA EDGKAKAEVA
RATVALEIEL RTVNEALPEV VYQLIDSVWS NVLFVTSLKH GYKSEAWLGS LKTLEDLVWS
VKIPATDEER KQLIRLVPDL LKRLRAGFDS ISFNPYEMST LFKSLEDVHL ACIRGVEVKR
RAPAGKVQKT TAAKPQVAAP QPAQNEEPPA KPAPVAKTAA PAPVAPKVEA PQPAAKQAAA
PTQPAAPVSV ASPAPAAPIA PVAPNDLPDT DTDMRQVAGF VQGAWFEMVD DKNSVVRCRL
AAFIKPTGKY IFVNRNGMKV AEKTQQELAL ALKKNRLRAL DNSVLFDRAL ETVVSGMRKP
RN
|
|---|
| |